Cargando…

Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement

Water is an essential chemical compound for living organisms, and twenty of its different crystal solid forms (ices) are known. Still, there are many fundamental problems with these structures such as establishing the correct positions and thermal motions of hydrogen atoms. The list of ice structure...

Descripción completa

Detalles Bibliográficos
Autores principales: Chodkiewicz, Michal L., Gajda, Roman, Lavina, Barbara, Tkachev, Sergey, Prakapenka, Vitali B., Dera, Przemyslaw, Wozniak, Krzysztof
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9438488/
https://www.ncbi.nlm.nih.gov/pubmed/36071798
http://dx.doi.org/10.1107/S2052252522006662
_version_ 1784781834983309312
author Chodkiewicz, Michal L.
Gajda, Roman
Lavina, Barbara
Tkachev, Sergey
Prakapenka, Vitali B.
Dera, Przemyslaw
Wozniak, Krzysztof
author_facet Chodkiewicz, Michal L.
Gajda, Roman
Lavina, Barbara
Tkachev, Sergey
Prakapenka, Vitali B.
Dera, Przemyslaw
Wozniak, Krzysztof
author_sort Chodkiewicz, Michal L.
collection PubMed
description Water is an essential chemical compound for living organisms, and twenty of its different crystal solid forms (ices) are known. Still, there are many fundamental problems with these structures such as establishing the correct positions and thermal motions of hydrogen atoms. The list of ice structures is not yet complete as DFT calculations have suggested the existence of additional and – to date – unknown phases. In many ice structures, neither neutron diffraction nor DFT calculations nor X-ray diffraction methods can easily solve the problem of hydrogen atom disorder or accurately determine their anisotropic displacement parameters (ADPs). Here, accurate crystal structures of H(2)O, D(2)O and mixed (50%H(2)O/50%D(2)O) ice VI obtained by Hirshfeld atom refinement (HAR) of high-pressure single-crystal synchrotron and laboratory X-ray diffraction data are presented. It was possible to obtain O—H/D bond lengths and ADPs for disordered hydrogen atoms which are in good agreement with the corresponding single-crystal neutron diffraction data. These results show that HAR combined with X-ray diffraction can compete with neutron diffraction in detailed studies of polymorphic forms of ice and crystals of other hydrogen-rich compounds. As neutron diffraction is relatively expensive, requires larger crystals which can be difficult to obtain and access to neutron facilities is restricted, cheaper and more accessible X-ray measurements combined with HAR can facilitate the verification of the existing ice polymorphs and the quest for new ones.
format Online
Article
Text
id pubmed-9438488
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-94384882022-09-06 Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement Chodkiewicz, Michal L. Gajda, Roman Lavina, Barbara Tkachev, Sergey Prakapenka, Vitali B. Dera, Przemyslaw Wozniak, Krzysztof IUCrJ Research Papers Water is an essential chemical compound for living organisms, and twenty of its different crystal solid forms (ices) are known. Still, there are many fundamental problems with these structures such as establishing the correct positions and thermal motions of hydrogen atoms. The list of ice structures is not yet complete as DFT calculations have suggested the existence of additional and – to date – unknown phases. In many ice structures, neither neutron diffraction nor DFT calculations nor X-ray diffraction methods can easily solve the problem of hydrogen atom disorder or accurately determine their anisotropic displacement parameters (ADPs). Here, accurate crystal structures of H(2)O, D(2)O and mixed (50%H(2)O/50%D(2)O) ice VI obtained by Hirshfeld atom refinement (HAR) of high-pressure single-crystal synchrotron and laboratory X-ray diffraction data are presented. It was possible to obtain O—H/D bond lengths and ADPs for disordered hydrogen atoms which are in good agreement with the corresponding single-crystal neutron diffraction data. These results show that HAR combined with X-ray diffraction can compete with neutron diffraction in detailed studies of polymorphic forms of ice and crystals of other hydrogen-rich compounds. As neutron diffraction is relatively expensive, requires larger crystals which can be difficult to obtain and access to neutron facilities is restricted, cheaper and more accessible X-ray measurements combined with HAR can facilitate the verification of the existing ice polymorphs and the quest for new ones. International Union of Crystallography 2022-07-16 /pmc/articles/PMC9438488/ /pubmed/36071798 http://dx.doi.org/10.1107/S2052252522006662 Text en © Michal L. Chodkiewicz et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Chodkiewicz, Michal L.
Gajda, Roman
Lavina, Barbara
Tkachev, Sergey
Prakapenka, Vitali B.
Dera, Przemyslaw
Wozniak, Krzysztof
Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement
title Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement
title_full Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement
title_fullStr Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement
title_full_unstemmed Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement
title_short Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement
title_sort accurate crystal structure of ice vi from x-ray diffraction with hirshfeld atom refinement
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9438488/
https://www.ncbi.nlm.nih.gov/pubmed/36071798
http://dx.doi.org/10.1107/S2052252522006662
work_keys_str_mv AT chodkiewiczmichall accuratecrystalstructureoficevifromxraydiffractionwithhirshfeldatomrefinement
AT gajdaroman accuratecrystalstructureoficevifromxraydiffractionwithhirshfeldatomrefinement
AT lavinabarbara accuratecrystalstructureoficevifromxraydiffractionwithhirshfeldatomrefinement
AT tkachevsergey accuratecrystalstructureoficevifromxraydiffractionwithhirshfeldatomrefinement
AT prakapenkavitalib accuratecrystalstructureoficevifromxraydiffractionwithhirshfeldatomrefinement
AT deraprzemyslaw accuratecrystalstructureoficevifromxraydiffractionwithhirshfeldatomrefinement
AT wozniakkrzysztof accuratecrystalstructureoficevifromxraydiffractionwithhirshfeldatomrefinement