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Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement
Water is an essential chemical compound for living organisms, and twenty of its different crystal solid forms (ices) are known. Still, there are many fundamental problems with these structures such as establishing the correct positions and thermal motions of hydrogen atoms. The list of ice structure...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9438488/ https://www.ncbi.nlm.nih.gov/pubmed/36071798 http://dx.doi.org/10.1107/S2052252522006662 |
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author | Chodkiewicz, Michal L. Gajda, Roman Lavina, Barbara Tkachev, Sergey Prakapenka, Vitali B. Dera, Przemyslaw Wozniak, Krzysztof |
author_facet | Chodkiewicz, Michal L. Gajda, Roman Lavina, Barbara Tkachev, Sergey Prakapenka, Vitali B. Dera, Przemyslaw Wozniak, Krzysztof |
author_sort | Chodkiewicz, Michal L. |
collection | PubMed |
description | Water is an essential chemical compound for living organisms, and twenty of its different crystal solid forms (ices) are known. Still, there are many fundamental problems with these structures such as establishing the correct positions and thermal motions of hydrogen atoms. The list of ice structures is not yet complete as DFT calculations have suggested the existence of additional and – to date – unknown phases. In many ice structures, neither neutron diffraction nor DFT calculations nor X-ray diffraction methods can easily solve the problem of hydrogen atom disorder or accurately determine their anisotropic displacement parameters (ADPs). Here, accurate crystal structures of H(2)O, D(2)O and mixed (50%H(2)O/50%D(2)O) ice VI obtained by Hirshfeld atom refinement (HAR) of high-pressure single-crystal synchrotron and laboratory X-ray diffraction data are presented. It was possible to obtain O—H/D bond lengths and ADPs for disordered hydrogen atoms which are in good agreement with the corresponding single-crystal neutron diffraction data. These results show that HAR combined with X-ray diffraction can compete with neutron diffraction in detailed studies of polymorphic forms of ice and crystals of other hydrogen-rich compounds. As neutron diffraction is relatively expensive, requires larger crystals which can be difficult to obtain and access to neutron facilities is restricted, cheaper and more accessible X-ray measurements combined with HAR can facilitate the verification of the existing ice polymorphs and the quest for new ones. |
format | Online Article Text |
id | pubmed-9438488 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-94384882022-09-06 Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement Chodkiewicz, Michal L. Gajda, Roman Lavina, Barbara Tkachev, Sergey Prakapenka, Vitali B. Dera, Przemyslaw Wozniak, Krzysztof IUCrJ Research Papers Water is an essential chemical compound for living organisms, and twenty of its different crystal solid forms (ices) are known. Still, there are many fundamental problems with these structures such as establishing the correct positions and thermal motions of hydrogen atoms. The list of ice structures is not yet complete as DFT calculations have suggested the existence of additional and – to date – unknown phases. In many ice structures, neither neutron diffraction nor DFT calculations nor X-ray diffraction methods can easily solve the problem of hydrogen atom disorder or accurately determine their anisotropic displacement parameters (ADPs). Here, accurate crystal structures of H(2)O, D(2)O and mixed (50%H(2)O/50%D(2)O) ice VI obtained by Hirshfeld atom refinement (HAR) of high-pressure single-crystal synchrotron and laboratory X-ray diffraction data are presented. It was possible to obtain O—H/D bond lengths and ADPs for disordered hydrogen atoms which are in good agreement with the corresponding single-crystal neutron diffraction data. These results show that HAR combined with X-ray diffraction can compete with neutron diffraction in detailed studies of polymorphic forms of ice and crystals of other hydrogen-rich compounds. As neutron diffraction is relatively expensive, requires larger crystals which can be difficult to obtain and access to neutron facilities is restricted, cheaper and more accessible X-ray measurements combined with HAR can facilitate the verification of the existing ice polymorphs and the quest for new ones. International Union of Crystallography 2022-07-16 /pmc/articles/PMC9438488/ /pubmed/36071798 http://dx.doi.org/10.1107/S2052252522006662 Text en © Michal L. Chodkiewicz et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Chodkiewicz, Michal L. Gajda, Roman Lavina, Barbara Tkachev, Sergey Prakapenka, Vitali B. Dera, Przemyslaw Wozniak, Krzysztof Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement |
title | Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement |
title_full | Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement |
title_fullStr | Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement |
title_full_unstemmed | Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement |
title_short | Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement |
title_sort | accurate crystal structure of ice vi from x-ray diffraction with hirshfeld atom refinement |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9438488/ https://www.ncbi.nlm.nih.gov/pubmed/36071798 http://dx.doi.org/10.1107/S2052252522006662 |
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