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Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures
MOTIVATION: In this article, we consider how to evaluate survival distribution predictions with measures of discrimination. This is non-trivial as discrimination measures are the most commonly used in survival analysis and yet there is no clear method to derive a risk prediction from a distribution...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9438958/ https://www.ncbi.nlm.nih.gov/pubmed/35818973 http://dx.doi.org/10.1093/bioinformatics/btac451 |
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author | Sonabend, Raphael Bender, Andreas Vollmer, Sebastian |
author_facet | Sonabend, Raphael Bender, Andreas Vollmer, Sebastian |
author_sort | Sonabend, Raphael |
collection | PubMed |
description | MOTIVATION: In this article, we consider how to evaluate survival distribution predictions with measures of discrimination. This is non-trivial as discrimination measures are the most commonly used in survival analysis and yet there is no clear method to derive a risk prediction from a distribution prediction. We survey methods proposed in literature and software and consider their respective advantages and disadvantages. RESULTS: Whilst distributions are frequently evaluated by discrimination measures, we find that the method for doing so is rarely described in the literature and often leads to unfair comparisons or ‘C-hacking’. We demonstrate by example how simple it can be to manipulate results and use this to argue for better reporting guidelines and transparency in the literature. We recommend that machine learning survival analysis software implements clear transformations between distribution and risk predictions in order to allow more transparent and accessible model evaluation. AVAILABILITY AND IMPLEMENTATION: The code used in the final experiment is available at https://github.com/RaphaelS1/distribution_discrimination. |
format | Online Article Text |
id | pubmed-9438958 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-94389582022-09-06 Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures Sonabend, Raphael Bender, Andreas Vollmer, Sebastian Bioinformatics Original Papers MOTIVATION: In this article, we consider how to evaluate survival distribution predictions with measures of discrimination. This is non-trivial as discrimination measures are the most commonly used in survival analysis and yet there is no clear method to derive a risk prediction from a distribution prediction. We survey methods proposed in literature and software and consider their respective advantages and disadvantages. RESULTS: Whilst distributions are frequently evaluated by discrimination measures, we find that the method for doing so is rarely described in the literature and often leads to unfair comparisons or ‘C-hacking’. We demonstrate by example how simple it can be to manipulate results and use this to argue for better reporting guidelines and transparency in the literature. We recommend that machine learning survival analysis software implements clear transformations between distribution and risk predictions in order to allow more transparent and accessible model evaluation. AVAILABILITY AND IMPLEMENTATION: The code used in the final experiment is available at https://github.com/RaphaelS1/distribution_discrimination. Oxford University Press 2022-07-12 /pmc/articles/PMC9438958/ /pubmed/35818973 http://dx.doi.org/10.1093/bioinformatics/btac451 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Papers Sonabend, Raphael Bender, Andreas Vollmer, Sebastian Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures |
title | Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures |
title_full | Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures |
title_fullStr | Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures |
title_full_unstemmed | Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures |
title_short | Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures |
title_sort | avoiding c-hacking when evaluating survival distribution predictions with discrimination measures |
topic | Original Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9438958/ https://www.ncbi.nlm.nih.gov/pubmed/35818973 http://dx.doi.org/10.1093/bioinformatics/btac451 |
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