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Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures

MOTIVATION: In this article, we consider how to evaluate survival distribution predictions with measures of discrimination. This is non-trivial as discrimination measures are the most commonly used in survival analysis and yet there is no clear method to derive a risk prediction from a distribution...

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Detalles Bibliográficos
Autores principales: Sonabend, Raphael, Bender, Andreas, Vollmer, Sebastian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9438958/
https://www.ncbi.nlm.nih.gov/pubmed/35818973
http://dx.doi.org/10.1093/bioinformatics/btac451
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author Sonabend, Raphael
Bender, Andreas
Vollmer, Sebastian
author_facet Sonabend, Raphael
Bender, Andreas
Vollmer, Sebastian
author_sort Sonabend, Raphael
collection PubMed
description MOTIVATION: In this article, we consider how to evaluate survival distribution predictions with measures of discrimination. This is non-trivial as discrimination measures are the most commonly used in survival analysis and yet there is no clear method to derive a risk prediction from a distribution prediction. We survey methods proposed in literature and software and consider their respective advantages and disadvantages. RESULTS: Whilst distributions are frequently evaluated by discrimination measures, we find that the method for doing so is rarely described in the literature and often leads to unfair comparisons or ‘C-hacking’. We demonstrate by example how simple it can be to manipulate results and use this to argue for better reporting guidelines and transparency in the literature. We recommend that machine learning survival analysis software implements clear transformations between distribution and risk predictions in order to allow more transparent and accessible model evaluation. AVAILABILITY AND IMPLEMENTATION: The code used in the final experiment is available at https://github.com/RaphaelS1/distribution_discrimination.
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spelling pubmed-94389582022-09-06 Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures Sonabend, Raphael Bender, Andreas Vollmer, Sebastian Bioinformatics Original Papers MOTIVATION: In this article, we consider how to evaluate survival distribution predictions with measures of discrimination. This is non-trivial as discrimination measures are the most commonly used in survival analysis and yet there is no clear method to derive a risk prediction from a distribution prediction. We survey methods proposed in literature and software and consider their respective advantages and disadvantages. RESULTS: Whilst distributions are frequently evaluated by discrimination measures, we find that the method for doing so is rarely described in the literature and often leads to unfair comparisons or ‘C-hacking’. We demonstrate by example how simple it can be to manipulate results and use this to argue for better reporting guidelines and transparency in the literature. We recommend that machine learning survival analysis software implements clear transformations between distribution and risk predictions in order to allow more transparent and accessible model evaluation. AVAILABILITY AND IMPLEMENTATION: The code used in the final experiment is available at https://github.com/RaphaelS1/distribution_discrimination. Oxford University Press 2022-07-12 /pmc/articles/PMC9438958/ /pubmed/35818973 http://dx.doi.org/10.1093/bioinformatics/btac451 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Papers
Sonabend, Raphael
Bender, Andreas
Vollmer, Sebastian
Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures
title Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures
title_full Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures
title_fullStr Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures
title_full_unstemmed Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures
title_short Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures
title_sort avoiding c-hacking when evaluating survival distribution predictions with discrimination measures
topic Original Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9438958/
https://www.ncbi.nlm.nih.gov/pubmed/35818973
http://dx.doi.org/10.1093/bioinformatics/btac451
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