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Self-initialized active contours for microscopic cell image segmentation

Level set models are suitable for processing topological changes in different regions of images while performing segmentation. Active contour models require an empirical setting for initial parameters, which is tedious for the end-user. This study proposes an incremental level set model with the aut...

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Autores principales: Niaz, Asim, Iqbal, Ehtesham, Akram, Farhan, Kim, Jin, Choi, Kwang Nam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440041/
https://www.ncbi.nlm.nih.gov/pubmed/36056042
http://dx.doi.org/10.1038/s41598-022-18708-5
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author Niaz, Asim
Iqbal, Ehtesham
Akram, Farhan
Kim, Jin
Choi, Kwang Nam
author_facet Niaz, Asim
Iqbal, Ehtesham
Akram, Farhan
Kim, Jin
Choi, Kwang Nam
author_sort Niaz, Asim
collection PubMed
description Level set models are suitable for processing topological changes in different regions of images while performing segmentation. Active contour models require an empirical setting for initial parameters, which is tedious for the end-user. This study proposes an incremental level set model with the automatic initialization of contours based on local and global fitting energies that enable it to capture image regions containing intensity corruption or other light artifacts. The region-based area and the region-based length terms use signed pressure force (SPF) to strengthen the balloon force. SPF helps to achieve a smooth version of the gradient descent flow in terms of energy minimization. The proposed model is tested on multiple synthetic and real images. Our model has four advantages: first, there is no need for the end user to initialize the parameters; instead, the model is self-initialized. Second, it is more accurate than other methods. Third, it shows lower computational complexity. Fourth, it does not depend on the starting position of the contour. Finally, we evaluated the performance of our model on microscopic cell images (Coelho et al., in: 2009 IEEE international symposium on biomedical imaging: from nano to macro, IEEE, 2009) to confirm that its performance is superior to that of other state-of-the-art models.
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spelling pubmed-94400412022-09-04 Self-initialized active contours for microscopic cell image segmentation Niaz, Asim Iqbal, Ehtesham Akram, Farhan Kim, Jin Choi, Kwang Nam Sci Rep Article Level set models are suitable for processing topological changes in different regions of images while performing segmentation. Active contour models require an empirical setting for initial parameters, which is tedious for the end-user. This study proposes an incremental level set model with the automatic initialization of contours based on local and global fitting energies that enable it to capture image regions containing intensity corruption or other light artifacts. The region-based area and the region-based length terms use signed pressure force (SPF) to strengthen the balloon force. SPF helps to achieve a smooth version of the gradient descent flow in terms of energy minimization. The proposed model is tested on multiple synthetic and real images. Our model has four advantages: first, there is no need for the end user to initialize the parameters; instead, the model is self-initialized. Second, it is more accurate than other methods. Third, it shows lower computational complexity. Fourth, it does not depend on the starting position of the contour. Finally, we evaluated the performance of our model on microscopic cell images (Coelho et al., in: 2009 IEEE international symposium on biomedical imaging: from nano to macro, IEEE, 2009) to confirm that its performance is superior to that of other state-of-the-art models. Nature Publishing Group UK 2022-09-02 /pmc/articles/PMC9440041/ /pubmed/36056042 http://dx.doi.org/10.1038/s41598-022-18708-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Niaz, Asim
Iqbal, Ehtesham
Akram, Farhan
Kim, Jin
Choi, Kwang Nam
Self-initialized active contours for microscopic cell image segmentation
title Self-initialized active contours for microscopic cell image segmentation
title_full Self-initialized active contours for microscopic cell image segmentation
title_fullStr Self-initialized active contours for microscopic cell image segmentation
title_full_unstemmed Self-initialized active contours for microscopic cell image segmentation
title_short Self-initialized active contours for microscopic cell image segmentation
title_sort self-initialized active contours for microscopic cell image segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440041/
https://www.ncbi.nlm.nih.gov/pubmed/36056042
http://dx.doi.org/10.1038/s41598-022-18708-5
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