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Gabi wheat a panel of European elite lines as central stock for wheat genetic research

In plant sciences, curation and availability of interoperable phenotypic and genomic data is still in its infancy and represents an obstacle to rapid scientific discoveries in this field. To that end, supplementing the efforts being made to generate open access wheat genome, pan wheat genome and oth...

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Autores principales: Gogna, Abhishek, Schulthess, Albert W., Röder, Marion S., Ganal, Martin W., Reif, Jochen C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440043/
https://www.ncbi.nlm.nih.gov/pubmed/36056030
http://dx.doi.org/10.1038/s41597-022-01651-5
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author Gogna, Abhishek
Schulthess, Albert W.
Röder, Marion S.
Ganal, Martin W.
Reif, Jochen C.
author_facet Gogna, Abhishek
Schulthess, Albert W.
Röder, Marion S.
Ganal, Martin W.
Reif, Jochen C.
author_sort Gogna, Abhishek
collection PubMed
description In plant sciences, curation and availability of interoperable phenotypic and genomic data is still in its infancy and represents an obstacle to rapid scientific discoveries in this field. To that end, supplementing the efforts being made to generate open access wheat genome, pan wheat genome and other bioinformatic resources, we present the GABI-WHEAT panel of elite European cultivars comprising 358 winter and 14 summer wheat varieties released between 1975 to 2007. The panel has been genotyped with SNP arrays of increasing density to investigate several important agronomic, quality and disease resistance traits. The robustness of investigated traits and interoperability of genomic and phenotypic data was assessed in the current publication with the aim to transform this panel into a public data resource for future genetic research in wheat. Consecutively, the phenotypic data was formatted to comply with FAIR principles and linked to online databases to substantiate panel origin information and quality. Thus, we were able to make a valuable resource available for plant science in a sustainable way.
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spelling pubmed-94400432022-09-04 Gabi wheat a panel of European elite lines as central stock for wheat genetic research Gogna, Abhishek Schulthess, Albert W. Röder, Marion S. Ganal, Martin W. Reif, Jochen C. Sci Data Data Descriptor In plant sciences, curation and availability of interoperable phenotypic and genomic data is still in its infancy and represents an obstacle to rapid scientific discoveries in this field. To that end, supplementing the efforts being made to generate open access wheat genome, pan wheat genome and other bioinformatic resources, we present the GABI-WHEAT panel of elite European cultivars comprising 358 winter and 14 summer wheat varieties released between 1975 to 2007. The panel has been genotyped with SNP arrays of increasing density to investigate several important agronomic, quality and disease resistance traits. The robustness of investigated traits and interoperability of genomic and phenotypic data was assessed in the current publication with the aim to transform this panel into a public data resource for future genetic research in wheat. Consecutively, the phenotypic data was formatted to comply with FAIR principles and linked to online databases to substantiate panel origin information and quality. Thus, we were able to make a valuable resource available for plant science in a sustainable way. Nature Publishing Group UK 2022-09-02 /pmc/articles/PMC9440043/ /pubmed/36056030 http://dx.doi.org/10.1038/s41597-022-01651-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Gogna, Abhishek
Schulthess, Albert W.
Röder, Marion S.
Ganal, Martin W.
Reif, Jochen C.
Gabi wheat a panel of European elite lines as central stock for wheat genetic research
title Gabi wheat a panel of European elite lines as central stock for wheat genetic research
title_full Gabi wheat a panel of European elite lines as central stock for wheat genetic research
title_fullStr Gabi wheat a panel of European elite lines as central stock for wheat genetic research
title_full_unstemmed Gabi wheat a panel of European elite lines as central stock for wheat genetic research
title_short Gabi wheat a panel of European elite lines as central stock for wheat genetic research
title_sort gabi wheat a panel of european elite lines as central stock for wheat genetic research
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440043/
https://www.ncbi.nlm.nih.gov/pubmed/36056030
http://dx.doi.org/10.1038/s41597-022-01651-5
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