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Active learning of reactive Bayesian force fields applied to heterogeneous catalysis dynamics of H/Pt
Atomistic modeling of chemically reactive systems has so far relied on either expensive ab initio methods or bond-order force fields requiring arduous parametrization. Here, we describe a Bayesian active learning framework for autonomous “on-the-fly” training of fast and accurate reactive many-body...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440250/ https://www.ncbi.nlm.nih.gov/pubmed/36055982 http://dx.doi.org/10.1038/s41467-022-32294-0 |
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author | Vandermause, Jonathan Xie, Yu Lim, Jin Soo Owen, Cameron J. Kozinsky, Boris |
author_facet | Vandermause, Jonathan Xie, Yu Lim, Jin Soo Owen, Cameron J. Kozinsky, Boris |
author_sort | Vandermause, Jonathan |
collection | PubMed |
description | Atomistic modeling of chemically reactive systems has so far relied on either expensive ab initio methods or bond-order force fields requiring arduous parametrization. Here, we describe a Bayesian active learning framework for autonomous “on-the-fly” training of fast and accurate reactive many-body force fields during molecular dynamics simulations. At each time-step, predictive uncertainties of a sparse Gaussian process are evaluated to automatically determine whether additional ab initio training data are needed. We introduce a general method for mapping trained kernel models onto equivalent polynomial models whose prediction cost is much lower and independent of the training set size. As a demonstration, we perform direct two-phase simulations of heterogeneous H(2) turnover on the Pt(111) catalyst surface at chemical accuracy. The model trains itself in three days and performs at twice the speed of a ReaxFF model, while maintaining much higher fidelity to DFT and excellent agreement with experiment. |
format | Online Article Text |
id | pubmed-9440250 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-94402502022-09-04 Active learning of reactive Bayesian force fields applied to heterogeneous catalysis dynamics of H/Pt Vandermause, Jonathan Xie, Yu Lim, Jin Soo Owen, Cameron J. Kozinsky, Boris Nat Commun Article Atomistic modeling of chemically reactive systems has so far relied on either expensive ab initio methods or bond-order force fields requiring arduous parametrization. Here, we describe a Bayesian active learning framework for autonomous “on-the-fly” training of fast and accurate reactive many-body force fields during molecular dynamics simulations. At each time-step, predictive uncertainties of a sparse Gaussian process are evaluated to automatically determine whether additional ab initio training data are needed. We introduce a general method for mapping trained kernel models onto equivalent polynomial models whose prediction cost is much lower and independent of the training set size. As a demonstration, we perform direct two-phase simulations of heterogeneous H(2) turnover on the Pt(111) catalyst surface at chemical accuracy. The model trains itself in three days and performs at twice the speed of a ReaxFF model, while maintaining much higher fidelity to DFT and excellent agreement with experiment. Nature Publishing Group UK 2022-09-02 /pmc/articles/PMC9440250/ /pubmed/36055982 http://dx.doi.org/10.1038/s41467-022-32294-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Vandermause, Jonathan Xie, Yu Lim, Jin Soo Owen, Cameron J. Kozinsky, Boris Active learning of reactive Bayesian force fields applied to heterogeneous catalysis dynamics of H/Pt |
title | Active learning of reactive Bayesian force fields applied to heterogeneous catalysis dynamics of H/Pt |
title_full | Active learning of reactive Bayesian force fields applied to heterogeneous catalysis dynamics of H/Pt |
title_fullStr | Active learning of reactive Bayesian force fields applied to heterogeneous catalysis dynamics of H/Pt |
title_full_unstemmed | Active learning of reactive Bayesian force fields applied to heterogeneous catalysis dynamics of H/Pt |
title_short | Active learning of reactive Bayesian force fields applied to heterogeneous catalysis dynamics of H/Pt |
title_sort | active learning of reactive bayesian force fields applied to heterogeneous catalysis dynamics of h/pt |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440250/ https://www.ncbi.nlm.nih.gov/pubmed/36055982 http://dx.doi.org/10.1038/s41467-022-32294-0 |
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