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An Immune-Related Prognostic Risk Model in Colon Cancer by Bioinformatics Analysis

Colon cancer is one of the leading malignancies with poor prognosis worldwide. Immune cell infiltration has a potential prognostic value for colon cancer. This study aimed to establish an immune-related prognostic risk model for colon cancer by bioinformatics analysis. A total of 1670 differentially...

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Autores principales: Lai, Qing, Feng, Haifei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440785/
https://www.ncbi.nlm.nih.gov/pubmed/36065262
http://dx.doi.org/10.1155/2022/3640589
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author Lai, Qing
Feng, Haifei
author_facet Lai, Qing
Feng, Haifei
author_sort Lai, Qing
collection PubMed
description Colon cancer is one of the leading malignancies with poor prognosis worldwide. Immune cell infiltration has a potential prognostic value for colon cancer. This study aimed to establish an immune-related prognostic risk model for colon cancer by bioinformatics analysis. A total of 1670 differentially expressed genes (DEGs), including 177 immune-related genes, were identified from The Cancer Genome Atlas (TCGA) dataset. A prognostic risk model was constructed based on six critical immune-related genes (C-X-C motif chemokine ligand 1 (CXCL1), epiregulin (EREG), C-C motif chemokine ligand 24 (CCL24), fatty acid binding protein 4 (FABP4), tropomyosin 2 (TPM2), and semaphorin 3G (SEMA3G)). This model was validated using the microarray dataset GSE35982. In addition, Cox regression analysis showed that age and clinical stage were correlated with prognostic risk scores. Kaplan–Meier survival analysis showed that high risk scores correlated with low survival probabilities in patients with colon cancer. Downregulated TPM2, FABP4, and SEMA3G levels were positively associated with the activated mast cells, monocytes, and macrophages M2. Upregulated CXCL1 and EREG were positively correlated with macrophages M1 and activated T cells CD4 memory, respectively. Based on these results, we can conclude that the proposed prognostic risk model presents promising novel signatures for the diagnosis and prognosis prediction of colon cancer. This model may provide therapeutic benefits for the development of immunotherapy for colon cancer.
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spelling pubmed-94407852022-09-04 An Immune-Related Prognostic Risk Model in Colon Cancer by Bioinformatics Analysis Lai, Qing Feng, Haifei Evid Based Complement Alternat Med Research Article Colon cancer is one of the leading malignancies with poor prognosis worldwide. Immune cell infiltration has a potential prognostic value for colon cancer. This study aimed to establish an immune-related prognostic risk model for colon cancer by bioinformatics analysis. A total of 1670 differentially expressed genes (DEGs), including 177 immune-related genes, were identified from The Cancer Genome Atlas (TCGA) dataset. A prognostic risk model was constructed based on six critical immune-related genes (C-X-C motif chemokine ligand 1 (CXCL1), epiregulin (EREG), C-C motif chemokine ligand 24 (CCL24), fatty acid binding protein 4 (FABP4), tropomyosin 2 (TPM2), and semaphorin 3G (SEMA3G)). This model was validated using the microarray dataset GSE35982. In addition, Cox regression analysis showed that age and clinical stage were correlated with prognostic risk scores. Kaplan–Meier survival analysis showed that high risk scores correlated with low survival probabilities in patients with colon cancer. Downregulated TPM2, FABP4, and SEMA3G levels were positively associated with the activated mast cells, monocytes, and macrophages M2. Upregulated CXCL1 and EREG were positively correlated with macrophages M1 and activated T cells CD4 memory, respectively. Based on these results, we can conclude that the proposed prognostic risk model presents promising novel signatures for the diagnosis and prognosis prediction of colon cancer. This model may provide therapeutic benefits for the development of immunotherapy for colon cancer. Hindawi 2022-08-27 /pmc/articles/PMC9440785/ /pubmed/36065262 http://dx.doi.org/10.1155/2022/3640589 Text en Copyright © 2022 Qing Lai and Haifei Feng. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Lai, Qing
Feng, Haifei
An Immune-Related Prognostic Risk Model in Colon Cancer by Bioinformatics Analysis
title An Immune-Related Prognostic Risk Model in Colon Cancer by Bioinformatics Analysis
title_full An Immune-Related Prognostic Risk Model in Colon Cancer by Bioinformatics Analysis
title_fullStr An Immune-Related Prognostic Risk Model in Colon Cancer by Bioinformatics Analysis
title_full_unstemmed An Immune-Related Prognostic Risk Model in Colon Cancer by Bioinformatics Analysis
title_short An Immune-Related Prognostic Risk Model in Colon Cancer by Bioinformatics Analysis
title_sort immune-related prognostic risk model in colon cancer by bioinformatics analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440785/
https://www.ncbi.nlm.nih.gov/pubmed/36065262
http://dx.doi.org/10.1155/2022/3640589
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