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Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis
PURPOSE: The objectives of our study were to assess the association of radiological imaging and gene expression with patient outcomes in non-small cell lung cancer (NSCLC) and construct a nomogram by combining selected radiomic, genomic, and clinical risk factors to improve the performance of the ri...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440821/ https://www.ncbi.nlm.nih.gov/pubmed/36065309 http://dx.doi.org/10.1155/2022/5131170 |
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author | Chen, Wei Qiao, Xu Yin, Shang Zhang, Xianru Xu, Xin |
author_facet | Chen, Wei Qiao, Xu Yin, Shang Zhang, Xianru Xu, Xin |
author_sort | Chen, Wei |
collection | PubMed |
description | PURPOSE: The objectives of our study were to assess the association of radiological imaging and gene expression with patient outcomes in non-small cell lung cancer (NSCLC) and construct a nomogram by combining selected radiomic, genomic, and clinical risk factors to improve the performance of the risk model. METHODS: A total of 116 cases of NSCLC with CT images, gene expression, and clinical factors were studied, wherein 87 patients were used as the training cohort, and 29 patients were used as an independent testing cohort. Handcrafted radiomic features and deep-learning genomic features were extracted and selected from CT images and gene expression analysis, respectively. Two risk scores were calculated through Cox regression models for each patient based on radiomic features and genomic features to predict overall survival (OS). Finally, a fusion survival model was constructed by incorporating these two risk scores and clinical factors. RESULTS: The fusion model that combined CT images, gene expression data, and clinical factors effectively stratified patients into low- and high-risk groups. The C-indexes for OS prediction were 0.85 and 0.736 in the training and testing cohorts, respectively, which was better than that based on unimodal data. CONCLUSIONS: Combining radiomics and genomics can effectively improve OS prediction for NSCLC patients. |
format | Online Article Text |
id | pubmed-9440821 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-94408212022-09-04 Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis Chen, Wei Qiao, Xu Yin, Shang Zhang, Xianru Xu, Xin J Oncol Research Article PURPOSE: The objectives of our study were to assess the association of radiological imaging and gene expression with patient outcomes in non-small cell lung cancer (NSCLC) and construct a nomogram by combining selected radiomic, genomic, and clinical risk factors to improve the performance of the risk model. METHODS: A total of 116 cases of NSCLC with CT images, gene expression, and clinical factors were studied, wherein 87 patients were used as the training cohort, and 29 patients were used as an independent testing cohort. Handcrafted radiomic features and deep-learning genomic features were extracted and selected from CT images and gene expression analysis, respectively. Two risk scores were calculated through Cox regression models for each patient based on radiomic features and genomic features to predict overall survival (OS). Finally, a fusion survival model was constructed by incorporating these two risk scores and clinical factors. RESULTS: The fusion model that combined CT images, gene expression data, and clinical factors effectively stratified patients into low- and high-risk groups. The C-indexes for OS prediction were 0.85 and 0.736 in the training and testing cohorts, respectively, which was better than that based on unimodal data. CONCLUSIONS: Combining radiomics and genomics can effectively improve OS prediction for NSCLC patients. Hindawi 2022-08-27 /pmc/articles/PMC9440821/ /pubmed/36065309 http://dx.doi.org/10.1155/2022/5131170 Text en Copyright © 2022 Wei Chen et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Chen, Wei Qiao, Xu Yin, Shang Zhang, Xianru Xu, Xin Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis |
title | Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis |
title_full | Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis |
title_fullStr | Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis |
title_full_unstemmed | Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis |
title_short | Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis |
title_sort | integrating radiomics with genomics for non-small cell lung cancer survival analysis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440821/ https://www.ncbi.nlm.nih.gov/pubmed/36065309 http://dx.doi.org/10.1155/2022/5131170 |
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