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Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis

PURPOSE: The objectives of our study were to assess the association of radiological imaging and gene expression with patient outcomes in non-small cell lung cancer (NSCLC) and construct a nomogram by combining selected radiomic, genomic, and clinical risk factors to improve the performance of the ri...

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Detalles Bibliográficos
Autores principales: Chen, Wei, Qiao, Xu, Yin, Shang, Zhang, Xianru, Xu, Xin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440821/
https://www.ncbi.nlm.nih.gov/pubmed/36065309
http://dx.doi.org/10.1155/2022/5131170
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author Chen, Wei
Qiao, Xu
Yin, Shang
Zhang, Xianru
Xu, Xin
author_facet Chen, Wei
Qiao, Xu
Yin, Shang
Zhang, Xianru
Xu, Xin
author_sort Chen, Wei
collection PubMed
description PURPOSE: The objectives of our study were to assess the association of radiological imaging and gene expression with patient outcomes in non-small cell lung cancer (NSCLC) and construct a nomogram by combining selected radiomic, genomic, and clinical risk factors to improve the performance of the risk model. METHODS: A total of 116 cases of NSCLC with CT images, gene expression, and clinical factors were studied, wherein 87 patients were used as the training cohort, and 29 patients were used as an independent testing cohort. Handcrafted radiomic features and deep-learning genomic features were extracted and selected from CT images and gene expression analysis, respectively. Two risk scores were calculated through Cox regression models for each patient based on radiomic features and genomic features to predict overall survival (OS). Finally, a fusion survival model was constructed by incorporating these two risk scores and clinical factors. RESULTS: The fusion model that combined CT images, gene expression data, and clinical factors effectively stratified patients into low- and high-risk groups. The C-indexes for OS prediction were 0.85 and 0.736 in the training and testing cohorts, respectively, which was better than that based on unimodal data. CONCLUSIONS: Combining radiomics and genomics can effectively improve OS prediction for NSCLC patients.
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spelling pubmed-94408212022-09-04 Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis Chen, Wei Qiao, Xu Yin, Shang Zhang, Xianru Xu, Xin J Oncol Research Article PURPOSE: The objectives of our study were to assess the association of radiological imaging and gene expression with patient outcomes in non-small cell lung cancer (NSCLC) and construct a nomogram by combining selected radiomic, genomic, and clinical risk factors to improve the performance of the risk model. METHODS: A total of 116 cases of NSCLC with CT images, gene expression, and clinical factors were studied, wherein 87 patients were used as the training cohort, and 29 patients were used as an independent testing cohort. Handcrafted radiomic features and deep-learning genomic features were extracted and selected from CT images and gene expression analysis, respectively. Two risk scores were calculated through Cox regression models for each patient based on radiomic features and genomic features to predict overall survival (OS). Finally, a fusion survival model was constructed by incorporating these two risk scores and clinical factors. RESULTS: The fusion model that combined CT images, gene expression data, and clinical factors effectively stratified patients into low- and high-risk groups. The C-indexes for OS prediction were 0.85 and 0.736 in the training and testing cohorts, respectively, which was better than that based on unimodal data. CONCLUSIONS: Combining radiomics and genomics can effectively improve OS prediction for NSCLC patients. Hindawi 2022-08-27 /pmc/articles/PMC9440821/ /pubmed/36065309 http://dx.doi.org/10.1155/2022/5131170 Text en Copyright © 2022 Wei Chen et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Chen, Wei
Qiao, Xu
Yin, Shang
Zhang, Xianru
Xu, Xin
Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis
title Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis
title_full Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis
title_fullStr Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis
title_full_unstemmed Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis
title_short Integrating Radiomics with Genomics for Non-Small Cell Lung Cancer Survival Analysis
title_sort integrating radiomics with genomics for non-small cell lung cancer survival analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9440821/
https://www.ncbi.nlm.nih.gov/pubmed/36065309
http://dx.doi.org/10.1155/2022/5131170
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