Cargando…
A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes
Breast cancer (BC) accounts for the highest proportion of the all cancers among women, and necroptosis is recognized as a form of caspase-independent programmed cell death. We created prognostic signatures using univariate survival analysis, and lasso regression, to assess immune microenvironments b...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9441943/ https://www.ncbi.nlm.nih.gov/pubmed/36072666 http://dx.doi.org/10.3389/fgene.2022.897538 |
_version_ | 1784782702085406720 |
---|---|
author | Yan, Congzhi Liu, Conghui Wu, Zhixuan Dai, Yinwei Xia, Erjie Hu, Wenjing Dai, Xuanxuan |
author_facet | Yan, Congzhi Liu, Conghui Wu, Zhixuan Dai, Yinwei Xia, Erjie Hu, Wenjing Dai, Xuanxuan |
author_sort | Yan, Congzhi |
collection | PubMed |
description | Breast cancer (BC) accounts for the highest proportion of the all cancers among women, and necroptosis is recognized as a form of caspase-independent programmed cell death. We created prognostic signatures using univariate survival analysis, and lasso regression, to assess immune microenvironments between subgroups. We then used network pharmacology to bind our drugs to target differentially expressed genes (DEGs). A signature comprising a set of necroptosis-related genes was established to predict patient outcomes based on median risk scores. Those above and below the median were classified as high-risk group (HRG) and low-risk group (LRG), respectively. Patients at high risk had lower overall survival, and poorer predicted tumor, nodes, and metastases stages (TNM). The novel prognostic signature can effectively predict the prognosis of breast cancer patients docking of β,β-dimethyl acryloyl shikonin (DMAS) to possible targets to cure breast cancer. We found that all current prognostic models do not offer suitable treatment options. In additional, by docking drugs DMAS that have been initially validated in our laboratory to treat breast cancer. We hope that this novel approach could contribute to cancer research. |
format | Online Article Text |
id | pubmed-9441943 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94419432022-09-06 A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes Yan, Congzhi Liu, Conghui Wu, Zhixuan Dai, Yinwei Xia, Erjie Hu, Wenjing Dai, Xuanxuan Front Genet Genetics Breast cancer (BC) accounts for the highest proportion of the all cancers among women, and necroptosis is recognized as a form of caspase-independent programmed cell death. We created prognostic signatures using univariate survival analysis, and lasso regression, to assess immune microenvironments between subgroups. We then used network pharmacology to bind our drugs to target differentially expressed genes (DEGs). A signature comprising a set of necroptosis-related genes was established to predict patient outcomes based on median risk scores. Those above and below the median were classified as high-risk group (HRG) and low-risk group (LRG), respectively. Patients at high risk had lower overall survival, and poorer predicted tumor, nodes, and metastases stages (TNM). The novel prognostic signature can effectively predict the prognosis of breast cancer patients docking of β,β-dimethyl acryloyl shikonin (DMAS) to possible targets to cure breast cancer. We found that all current prognostic models do not offer suitable treatment options. In additional, by docking drugs DMAS that have been initially validated in our laboratory to treat breast cancer. We hope that this novel approach could contribute to cancer research. Frontiers Media S.A. 2022-08-22 /pmc/articles/PMC9441943/ /pubmed/36072666 http://dx.doi.org/10.3389/fgene.2022.897538 Text en Copyright © 2022 Yan, Liu, Wu, Dai, Xia, Hu and Dai. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Yan, Congzhi Liu, Conghui Wu, Zhixuan Dai, Yinwei Xia, Erjie Hu, Wenjing Dai, Xuanxuan A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes |
title | A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes |
title_full | A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes |
title_fullStr | A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes |
title_full_unstemmed | A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes |
title_short | A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes |
title_sort | novel approach: combining prognostic models and network pharmacology to target breast cancer necroptosis-associated genes |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9441943/ https://www.ncbi.nlm.nih.gov/pubmed/36072666 http://dx.doi.org/10.3389/fgene.2022.897538 |
work_keys_str_mv | AT yancongzhi anovelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT liuconghui anovelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT wuzhixuan anovelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT daiyinwei anovelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT xiaerjie anovelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT huwenjing anovelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT daixuanxuan anovelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT yancongzhi novelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT liuconghui novelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT wuzhixuan novelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT daiyinwei novelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT xiaerjie novelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT huwenjing novelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes AT daixuanxuan novelapproachcombiningprognosticmodelsandnetworkpharmacologytotargetbreastcancernecroptosisassociatedgenes |