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A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes

Breast cancer (BC) accounts for the highest proportion of the all cancers among women, and necroptosis is recognized as a form of caspase-independent programmed cell death. We created prognostic signatures using univariate survival analysis, and lasso regression, to assess immune microenvironments b...

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Autores principales: Yan, Congzhi, Liu, Conghui, Wu, Zhixuan, Dai, Yinwei, Xia, Erjie, Hu, Wenjing, Dai, Xuanxuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9441943/
https://www.ncbi.nlm.nih.gov/pubmed/36072666
http://dx.doi.org/10.3389/fgene.2022.897538
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author Yan, Congzhi
Liu, Conghui
Wu, Zhixuan
Dai, Yinwei
Xia, Erjie
Hu, Wenjing
Dai, Xuanxuan
author_facet Yan, Congzhi
Liu, Conghui
Wu, Zhixuan
Dai, Yinwei
Xia, Erjie
Hu, Wenjing
Dai, Xuanxuan
author_sort Yan, Congzhi
collection PubMed
description Breast cancer (BC) accounts for the highest proportion of the all cancers among women, and necroptosis is recognized as a form of caspase-independent programmed cell death. We created prognostic signatures using univariate survival analysis, and lasso regression, to assess immune microenvironments between subgroups. We then used network pharmacology to bind our drugs to target differentially expressed genes (DEGs). A signature comprising a set of necroptosis-related genes was established to predict patient outcomes based on median risk scores. Those above and below the median were classified as high-risk group (HRG) and low-risk group (LRG), respectively. Patients at high risk had lower overall survival, and poorer predicted tumor, nodes, and metastases stages (TNM). The novel prognostic signature can effectively predict the prognosis of breast cancer patients docking of β,β-dimethyl acryloyl shikonin (DMAS) to possible targets to cure breast cancer. We found that all current prognostic models do not offer suitable treatment options. In additional, by docking drugs DMAS that have been initially validated in our laboratory to treat breast cancer. We hope that this novel approach could contribute to cancer research.
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spelling pubmed-94419432022-09-06 A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes Yan, Congzhi Liu, Conghui Wu, Zhixuan Dai, Yinwei Xia, Erjie Hu, Wenjing Dai, Xuanxuan Front Genet Genetics Breast cancer (BC) accounts for the highest proportion of the all cancers among women, and necroptosis is recognized as a form of caspase-independent programmed cell death. We created prognostic signatures using univariate survival analysis, and lasso regression, to assess immune microenvironments between subgroups. We then used network pharmacology to bind our drugs to target differentially expressed genes (DEGs). A signature comprising a set of necroptosis-related genes was established to predict patient outcomes based on median risk scores. Those above and below the median were classified as high-risk group (HRG) and low-risk group (LRG), respectively. Patients at high risk had lower overall survival, and poorer predicted tumor, nodes, and metastases stages (TNM). The novel prognostic signature can effectively predict the prognosis of breast cancer patients docking of β,β-dimethyl acryloyl shikonin (DMAS) to possible targets to cure breast cancer. We found that all current prognostic models do not offer suitable treatment options. In additional, by docking drugs DMAS that have been initially validated in our laboratory to treat breast cancer. We hope that this novel approach could contribute to cancer research. Frontiers Media S.A. 2022-08-22 /pmc/articles/PMC9441943/ /pubmed/36072666 http://dx.doi.org/10.3389/fgene.2022.897538 Text en Copyright © 2022 Yan, Liu, Wu, Dai, Xia, Hu and Dai. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Yan, Congzhi
Liu, Conghui
Wu, Zhixuan
Dai, Yinwei
Xia, Erjie
Hu, Wenjing
Dai, Xuanxuan
A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes
title A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes
title_full A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes
title_fullStr A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes
title_full_unstemmed A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes
title_short A Novel Approach: Combining Prognostic Models and Network Pharmacology to Target Breast Cancer Necroptosis-Associated Genes
title_sort novel approach: combining prognostic models and network pharmacology to target breast cancer necroptosis-associated genes
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9441943/
https://www.ncbi.nlm.nih.gov/pubmed/36072666
http://dx.doi.org/10.3389/fgene.2022.897538
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