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Crystal structure determination, Hirshfeld surface, crystal void, inter­molecular inter­action energy analyses, as well as DFT and energy framework calculations of 2-(4-oxo-4,5-di­hydro-1H-pyra­zolo[3,4-d]pyrimidin-1-yl)acetic acid

In the title mol­ecule, C(7)H(6)N(4)O(3), the bicyclic ring system is planar with the carb­oxy­methyl group inclined by 81.05 (5)° to this plane. In the crystal, corrugated layers parallel to (010) are generated by N—H⋯O, O—H⋯N and C—H⋯O hydrogen-bonding inter­actions. The layers are associated thro...

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Autores principales: Irrou, Ezaddine, Elmachkouri, Younesse Ait, Oubella, Ali, Ouchtak, Hassan, Dalbouha, Samira, Mague, Joel T., Hökelek, Tuncer, El Ghayati, Lhoussaine, Sebbar, Nada Kheira, Taha, Mohamed Labd
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9443805/
https://www.ncbi.nlm.nih.gov/pubmed/36072525
http://dx.doi.org/10.1107/S2056989022008489
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author Irrou, Ezaddine
Elmachkouri, Younesse Ait
Oubella, Ali
Ouchtak, Hassan
Dalbouha, Samira
Mague, Joel T.
Hökelek, Tuncer
El Ghayati, Lhoussaine
Sebbar, Nada Kheira
Taha, Mohamed Labd
author_facet Irrou, Ezaddine
Elmachkouri, Younesse Ait
Oubella, Ali
Ouchtak, Hassan
Dalbouha, Samira
Mague, Joel T.
Hökelek, Tuncer
El Ghayati, Lhoussaine
Sebbar, Nada Kheira
Taha, Mohamed Labd
author_sort Irrou, Ezaddine
collection PubMed
description In the title mol­ecule, C(7)H(6)N(4)O(3), the bicyclic ring system is planar with the carb­oxy­methyl group inclined by 81.05 (5)° to this plane. In the crystal, corrugated layers parallel to (010) are generated by N—H⋯O, O—H⋯N and C—H⋯O hydrogen-bonding inter­actions. The layers are associated through C—H⋯π(ring) inter­actions. A Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H⋯O/O⋯H (34.8%), H⋯N/N⋯H (19.3%) and H⋯H (18.1%) inter­actions. The volume of the crystal voids and the percentage of free space were calculated to be 176.30 Å(3) and 10.94%, showing that there is no large cavity in the crystal packing. Computational methods revealed O—H⋯N, N—H⋯O and C—H⋯O hydrogen-bonding energies of 76.3, 55.2, 32.8 and 19.1 kJ mol(−1), respectively. Evaluations of the electrostatic, dispersion and total energy frameworks indicate that the stabilization is dominated via dispersion energy contributions. Moreover, the optimized mol­ecular structure, using density functional theory (DFT) at the B3LYP/6–311G(d,p) level, was compared with the experimentally determined one. The HOMO–LUMO energy gap was determined and the mol­ecular electrostatic potential (MEP) surface was calculated at the B3LYP/6–31G level to predict sites for electrophilic and nucleophilic attacks.
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spelling pubmed-94438052022-09-06 Crystal structure determination, Hirshfeld surface, crystal void, inter­molecular inter­action energy analyses, as well as DFT and energy framework calculations of 2-(4-oxo-4,5-di­hydro-1H-pyra­zolo[3,4-d]pyrimidin-1-yl)acetic acid Irrou, Ezaddine Elmachkouri, Younesse Ait Oubella, Ali Ouchtak, Hassan Dalbouha, Samira Mague, Joel T. Hökelek, Tuncer El Ghayati, Lhoussaine Sebbar, Nada Kheira Taha, Mohamed Labd Acta Crystallogr E Crystallogr Commun Research Communications In the title mol­ecule, C(7)H(6)N(4)O(3), the bicyclic ring system is planar with the carb­oxy­methyl group inclined by 81.05 (5)° to this plane. In the crystal, corrugated layers parallel to (010) are generated by N—H⋯O, O—H⋯N and C—H⋯O hydrogen-bonding inter­actions. The layers are associated through C—H⋯π(ring) inter­actions. A Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H⋯O/O⋯H (34.8%), H⋯N/N⋯H (19.3%) and H⋯H (18.1%) inter­actions. The volume of the crystal voids and the percentage of free space were calculated to be 176.30 Å(3) and 10.94%, showing that there is no large cavity in the crystal packing. Computational methods revealed O—H⋯N, N—H⋯O and C—H⋯O hydrogen-bonding energies of 76.3, 55.2, 32.8 and 19.1 kJ mol(−1), respectively. Evaluations of the electrostatic, dispersion and total energy frameworks indicate that the stabilization is dominated via dispersion energy contributions. Moreover, the optimized mol­ecular structure, using density functional theory (DFT) at the B3LYP/6–311G(d,p) level, was compared with the experimentally determined one. The HOMO–LUMO energy gap was determined and the mol­ecular electrostatic potential (MEP) surface was calculated at the B3LYP/6–31G level to predict sites for electrophilic and nucleophilic attacks. International Union of Crystallography 2022-08-31 /pmc/articles/PMC9443805/ /pubmed/36072525 http://dx.doi.org/10.1107/S2056989022008489 Text en © Irrou et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Communications
Irrou, Ezaddine
Elmachkouri, Younesse Ait
Oubella, Ali
Ouchtak, Hassan
Dalbouha, Samira
Mague, Joel T.
Hökelek, Tuncer
El Ghayati, Lhoussaine
Sebbar, Nada Kheira
Taha, Mohamed Labd
Crystal structure determination, Hirshfeld surface, crystal void, inter­molecular inter­action energy analyses, as well as DFT and energy framework calculations of 2-(4-oxo-4,5-di­hydro-1H-pyra­zolo[3,4-d]pyrimidin-1-yl)acetic acid
title Crystal structure determination, Hirshfeld surface, crystal void, inter­molecular inter­action energy analyses, as well as DFT and energy framework calculations of 2-(4-oxo-4,5-di­hydro-1H-pyra­zolo[3,4-d]pyrimidin-1-yl)acetic acid
title_full Crystal structure determination, Hirshfeld surface, crystal void, inter­molecular inter­action energy analyses, as well as DFT and energy framework calculations of 2-(4-oxo-4,5-di­hydro-1H-pyra­zolo[3,4-d]pyrimidin-1-yl)acetic acid
title_fullStr Crystal structure determination, Hirshfeld surface, crystal void, inter­molecular inter­action energy analyses, as well as DFT and energy framework calculations of 2-(4-oxo-4,5-di­hydro-1H-pyra­zolo[3,4-d]pyrimidin-1-yl)acetic acid
title_full_unstemmed Crystal structure determination, Hirshfeld surface, crystal void, inter­molecular inter­action energy analyses, as well as DFT and energy framework calculations of 2-(4-oxo-4,5-di­hydro-1H-pyra­zolo[3,4-d]pyrimidin-1-yl)acetic acid
title_short Crystal structure determination, Hirshfeld surface, crystal void, inter­molecular inter­action energy analyses, as well as DFT and energy framework calculations of 2-(4-oxo-4,5-di­hydro-1H-pyra­zolo[3,4-d]pyrimidin-1-yl)acetic acid
title_sort crystal structure determination, hirshfeld surface, crystal void, inter­molecular inter­action energy analyses, as well as dft and energy framework calculations of 2-(4-oxo-4,5-di­hydro-1h-pyra­zolo[3,4-d]pyrimidin-1-yl)acetic acid
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9443805/
https://www.ncbi.nlm.nih.gov/pubmed/36072525
http://dx.doi.org/10.1107/S2056989022008489
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