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Novel insight on marker genes and pathogenic peripheral neutrophil subtypes in acute pancreatitis

Acute pancreatitis is a common critical and acute gastrointestinal disease worldwide, with an increasing percentage of morbidity. However, the gene expression pattern in peripheral blood has not been fully analyzed. In addition, the mechanism of coronavirus disease 2019 (COVID-19)-induced acute panc...

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Autores principales: Zhang, Deyu, Wang, Meiqi, Zhang, Yang, Xia, Chuanchao, Peng, Lisi, Li, Keliang, Yin, Hua, Li, Shiyu, Yang, Xiaoli, Su, Xiaoju, Huang, Haojie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9444397/
https://www.ncbi.nlm.nih.gov/pubmed/36072587
http://dx.doi.org/10.3389/fimmu.2022.964622
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author Zhang, Deyu
Wang, Meiqi
Zhang, Yang
Xia, Chuanchao
Peng, Lisi
Li, Keliang
Yin, Hua
Li, Shiyu
Yang, Xiaoli
Su, Xiaoju
Huang, Haojie
author_facet Zhang, Deyu
Wang, Meiqi
Zhang, Yang
Xia, Chuanchao
Peng, Lisi
Li, Keliang
Yin, Hua
Li, Shiyu
Yang, Xiaoli
Su, Xiaoju
Huang, Haojie
author_sort Zhang, Deyu
collection PubMed
description Acute pancreatitis is a common critical and acute gastrointestinal disease worldwide, with an increasing percentage of morbidity. However, the gene expression pattern in peripheral blood has not been fully analyzed. In addition, the mechanism of coronavirus disease 2019 (COVID-19)-induced acute pancreatitis has not been investigated. Here, after bioinformatic analysis with machine-learning methods of the expression data of peripheral blood cells and validation in local patients, two functional gene modules in peripheral blood cells of acute pancreatitis were identified, and S100A6, S100A9, and S100A12 were validated as predictors of severe pancreatitis. Additionally, through a combination analysis of bulk sequencing and single-cell sequencing data of COVID-19 patients, a pivotal subtype of neutrophils with strong activation of the interferon-related pathway was identified as a pivotal peripheral blood cell subtype for COVID-19-induced acute pancreatitis. These results could facilitate the prognostic prediction of acute pancreatitis and research on COVID-19-induced acute pancreatitis.
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spelling pubmed-94443972022-09-06 Novel insight on marker genes and pathogenic peripheral neutrophil subtypes in acute pancreatitis Zhang, Deyu Wang, Meiqi Zhang, Yang Xia, Chuanchao Peng, Lisi Li, Keliang Yin, Hua Li, Shiyu Yang, Xiaoli Su, Xiaoju Huang, Haojie Front Immunol Immunology Acute pancreatitis is a common critical and acute gastrointestinal disease worldwide, with an increasing percentage of morbidity. However, the gene expression pattern in peripheral blood has not been fully analyzed. In addition, the mechanism of coronavirus disease 2019 (COVID-19)-induced acute pancreatitis has not been investigated. Here, after bioinformatic analysis with machine-learning methods of the expression data of peripheral blood cells and validation in local patients, two functional gene modules in peripheral blood cells of acute pancreatitis were identified, and S100A6, S100A9, and S100A12 were validated as predictors of severe pancreatitis. Additionally, through a combination analysis of bulk sequencing and single-cell sequencing data of COVID-19 patients, a pivotal subtype of neutrophils with strong activation of the interferon-related pathway was identified as a pivotal peripheral blood cell subtype for COVID-19-induced acute pancreatitis. These results could facilitate the prognostic prediction of acute pancreatitis and research on COVID-19-induced acute pancreatitis. Frontiers Media S.A. 2022-08-22 /pmc/articles/PMC9444397/ /pubmed/36072587 http://dx.doi.org/10.3389/fimmu.2022.964622 Text en Copyright © 2022 Zhang, Wang, Zhang, Xia, Peng, Li, Yin, Li, Yang, Su and Huang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Zhang, Deyu
Wang, Meiqi
Zhang, Yang
Xia, Chuanchao
Peng, Lisi
Li, Keliang
Yin, Hua
Li, Shiyu
Yang, Xiaoli
Su, Xiaoju
Huang, Haojie
Novel insight on marker genes and pathogenic peripheral neutrophil subtypes in acute pancreatitis
title Novel insight on marker genes and pathogenic peripheral neutrophil subtypes in acute pancreatitis
title_full Novel insight on marker genes and pathogenic peripheral neutrophil subtypes in acute pancreatitis
title_fullStr Novel insight on marker genes and pathogenic peripheral neutrophil subtypes in acute pancreatitis
title_full_unstemmed Novel insight on marker genes and pathogenic peripheral neutrophil subtypes in acute pancreatitis
title_short Novel insight on marker genes and pathogenic peripheral neutrophil subtypes in acute pancreatitis
title_sort novel insight on marker genes and pathogenic peripheral neutrophil subtypes in acute pancreatitis
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9444397/
https://www.ncbi.nlm.nih.gov/pubmed/36072587
http://dx.doi.org/10.3389/fimmu.2022.964622
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