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Interactive Medical Image Labeling Tool to Construct a Robust Convolutional Neural Network Training Data Set: Development and Validation Study

BACKGROUND: Skin ulcers are an important cause of morbidity and mortality everywhere in the world and occur due to several causes, including diabetes mellitus, peripheral neuropathy, immobility, pressure, arteriosclerosis, infections, and venous insufficiency. Ulcers are lesions that fail to undergo...

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Autores principales: Reifs, David, Reig-Bolaño, Ramon, Casals, Marta, Grau-Carrion, Sergi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9446137/
https://www.ncbi.nlm.nih.gov/pubmed/35994311
http://dx.doi.org/10.2196/37284
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author Reifs, David
Reig-Bolaño, Ramon
Casals, Marta
Grau-Carrion, Sergi
author_facet Reifs, David
Reig-Bolaño, Ramon
Casals, Marta
Grau-Carrion, Sergi
author_sort Reifs, David
collection PubMed
description BACKGROUND: Skin ulcers are an important cause of morbidity and mortality everywhere in the world and occur due to several causes, including diabetes mellitus, peripheral neuropathy, immobility, pressure, arteriosclerosis, infections, and venous insufficiency. Ulcers are lesions that fail to undergo an orderly healing process and produce functional and anatomical integrity in the expected time. In most cases, the methods of analysis used nowadays are rudimentary, which leads to errors and the use of invasive and uncomfortable techniques on patients. There are many studies that use a convolutional neural network to classify the different tissues in a wound. To obtain good results, the network must be trained with a correctly labeled data set by an expert in wound assessment. Typically, it is difficult to label pixel by pixel using a professional photo editor software, as this requires extensive time and effort from a health professional. OBJECTIVE: The aim of this paper is to implement a new, fast, and accurate method of labeling wound samples for training a neural network to classify different tissues. METHODS: We developed a support tool and evaluated its accuracy and reliability. We also compared the support tool classification with a digital gold standard (labeling the data with an image editing software). RESULTS: The obtained comparison between the gold standard and the proposed method was 0.9789 for background, 0.9842 for intact skin, 0.8426 for granulation tissue, 0.9309 for slough, and 0.9871 for necrotic. The obtained speed on average was 2.6, compared to that of an advanced image editing user. CONCLUSIONS: This method increases tagging speed on average compared to an advanced image editing user. This increase is greater with untrained users. The samples obtained with the new system are indistinguishable from the samples made with the gold standard.
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spelling pubmed-94461372022-09-07 Interactive Medical Image Labeling Tool to Construct a Robust Convolutional Neural Network Training Data Set: Development and Validation Study Reifs, David Reig-Bolaño, Ramon Casals, Marta Grau-Carrion, Sergi JMIR Med Inform Original Paper BACKGROUND: Skin ulcers are an important cause of morbidity and mortality everywhere in the world and occur due to several causes, including diabetes mellitus, peripheral neuropathy, immobility, pressure, arteriosclerosis, infections, and venous insufficiency. Ulcers are lesions that fail to undergo an orderly healing process and produce functional and anatomical integrity in the expected time. In most cases, the methods of analysis used nowadays are rudimentary, which leads to errors and the use of invasive and uncomfortable techniques on patients. There are many studies that use a convolutional neural network to classify the different tissues in a wound. To obtain good results, the network must be trained with a correctly labeled data set by an expert in wound assessment. Typically, it is difficult to label pixel by pixel using a professional photo editor software, as this requires extensive time and effort from a health professional. OBJECTIVE: The aim of this paper is to implement a new, fast, and accurate method of labeling wound samples for training a neural network to classify different tissues. METHODS: We developed a support tool and evaluated its accuracy and reliability. We also compared the support tool classification with a digital gold standard (labeling the data with an image editing software). RESULTS: The obtained comparison between the gold standard and the proposed method was 0.9789 for background, 0.9842 for intact skin, 0.8426 for granulation tissue, 0.9309 for slough, and 0.9871 for necrotic. The obtained speed on average was 2.6, compared to that of an advanced image editing user. CONCLUSIONS: This method increases tagging speed on average compared to an advanced image editing user. This increase is greater with untrained users. The samples obtained with the new system are indistinguishable from the samples made with the gold standard. JMIR Publications 2022-08-22 /pmc/articles/PMC9446137/ /pubmed/35994311 http://dx.doi.org/10.2196/37284 Text en ©David Reifs, Ramon Reig-Bolaño, Marta Casals, Sergi Grau-Carrion. Originally published in JMIR Medical Informatics (https://medinform.jmir.org), 22.08.2022. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Medical Informatics, is properly cited. The complete bibliographic information, a link to the original publication on https://medinform.jmir.org/, as well as this copyright and license information must be included.
spellingShingle Original Paper
Reifs, David
Reig-Bolaño, Ramon
Casals, Marta
Grau-Carrion, Sergi
Interactive Medical Image Labeling Tool to Construct a Robust Convolutional Neural Network Training Data Set: Development and Validation Study
title Interactive Medical Image Labeling Tool to Construct a Robust Convolutional Neural Network Training Data Set: Development and Validation Study
title_full Interactive Medical Image Labeling Tool to Construct a Robust Convolutional Neural Network Training Data Set: Development and Validation Study
title_fullStr Interactive Medical Image Labeling Tool to Construct a Robust Convolutional Neural Network Training Data Set: Development and Validation Study
title_full_unstemmed Interactive Medical Image Labeling Tool to Construct a Robust Convolutional Neural Network Training Data Set: Development and Validation Study
title_short Interactive Medical Image Labeling Tool to Construct a Robust Convolutional Neural Network Training Data Set: Development and Validation Study
title_sort interactive medical image labeling tool to construct a robust convolutional neural network training data set: development and validation study
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9446137/
https://www.ncbi.nlm.nih.gov/pubmed/35994311
http://dx.doi.org/10.2196/37284
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