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Identifying clinically applicable machine learning algorithms for glioma segmentation: recent advances and discoveries

BACKGROUND: While there are innumerable machine learning (ML) research algorithms used for segmentation of gliomas, there is yet to be a US FDA cleared product. The aim of this study is to explore the systemic limitations of research algorithms that have prevented translation from concept to product...

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Autores principales: Tillmanns, Niklas, Lum, Avery E, Cassinelli, Gabriel, Merkaj, Sara, Verma, Tej, Zeevi, Tal, Staib, Lawrence, Subramanian, Harry, Bahar, Ryan C, Brim, Waverly, Lost, Jan, Jekel, Leon, Brackett, Alexandria, Payabvash, Sam, Ikuta, Ichiro, Lin, MingDe, Bousabarah, Khaled, Johnson, Michele H, Cui, Jin, Malhotra, Ajay, Omuro, Antonio, Turowski, Bernd, Aboian, Mariam S
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9446682/
https://www.ncbi.nlm.nih.gov/pubmed/36071926
http://dx.doi.org/10.1093/noajnl/vdac093
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author Tillmanns, Niklas
Lum, Avery E
Cassinelli, Gabriel
Merkaj, Sara
Verma, Tej
Zeevi, Tal
Staib, Lawrence
Subramanian, Harry
Bahar, Ryan C
Brim, Waverly
Lost, Jan
Jekel, Leon
Brackett, Alexandria
Payabvash, Sam
Ikuta, Ichiro
Lin, MingDe
Bousabarah, Khaled
Johnson, Michele H
Cui, Jin
Malhotra, Ajay
Omuro, Antonio
Turowski, Bernd
Aboian, Mariam S
author_facet Tillmanns, Niklas
Lum, Avery E
Cassinelli, Gabriel
Merkaj, Sara
Verma, Tej
Zeevi, Tal
Staib, Lawrence
Subramanian, Harry
Bahar, Ryan C
Brim, Waverly
Lost, Jan
Jekel, Leon
Brackett, Alexandria
Payabvash, Sam
Ikuta, Ichiro
Lin, MingDe
Bousabarah, Khaled
Johnson, Michele H
Cui, Jin
Malhotra, Ajay
Omuro, Antonio
Turowski, Bernd
Aboian, Mariam S
author_sort Tillmanns, Niklas
collection PubMed
description BACKGROUND: While there are innumerable machine learning (ML) research algorithms used for segmentation of gliomas, there is yet to be a US FDA cleared product. The aim of this study is to explore the systemic limitations of research algorithms that have prevented translation from concept to product by a review of the current research literature. METHODS: We performed a systematic literature review on 4 databases. Of 11 727 articles, 58 articles met the inclusion criteria and were used for data extraction and screening using TRIPOD. RESULTS: We found that while many articles were published on ML-based glioma segmentation and report high accuracy results, there were substantial limitations in the methods and results portions of the papers that result in difficulty reproducing the methods and translation into clinical practice. CONCLUSIONS: In addition, we identified that more than a third of the articles used the same publicly available BRaTS and TCIA datasets and are responsible for the majority of patient data on which ML algorithms were trained, which leads to limited generalizability and potential for overfitting and bias.
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spelling pubmed-94466822022-09-06 Identifying clinically applicable machine learning algorithms for glioma segmentation: recent advances and discoveries Tillmanns, Niklas Lum, Avery E Cassinelli, Gabriel Merkaj, Sara Verma, Tej Zeevi, Tal Staib, Lawrence Subramanian, Harry Bahar, Ryan C Brim, Waverly Lost, Jan Jekel, Leon Brackett, Alexandria Payabvash, Sam Ikuta, Ichiro Lin, MingDe Bousabarah, Khaled Johnson, Michele H Cui, Jin Malhotra, Ajay Omuro, Antonio Turowski, Bernd Aboian, Mariam S Neurooncol Adv Review BACKGROUND: While there are innumerable machine learning (ML) research algorithms used for segmentation of gliomas, there is yet to be a US FDA cleared product. The aim of this study is to explore the systemic limitations of research algorithms that have prevented translation from concept to product by a review of the current research literature. METHODS: We performed a systematic literature review on 4 databases. Of 11 727 articles, 58 articles met the inclusion criteria and were used for data extraction and screening using TRIPOD. RESULTS: We found that while many articles were published on ML-based glioma segmentation and report high accuracy results, there were substantial limitations in the methods and results portions of the papers that result in difficulty reproducing the methods and translation into clinical practice. CONCLUSIONS: In addition, we identified that more than a third of the articles used the same publicly available BRaTS and TCIA datasets and are responsible for the majority of patient data on which ML algorithms were trained, which leads to limited generalizability and potential for overfitting and bias. Oxford University Press 2022-06-14 /pmc/articles/PMC9446682/ /pubmed/36071926 http://dx.doi.org/10.1093/noajnl/vdac093 Text en © The Author(s) 2022. Published by Oxford University Press, the Society for Neuro-Oncology and the European Association of Neuro-Oncology. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Review
Tillmanns, Niklas
Lum, Avery E
Cassinelli, Gabriel
Merkaj, Sara
Verma, Tej
Zeevi, Tal
Staib, Lawrence
Subramanian, Harry
Bahar, Ryan C
Brim, Waverly
Lost, Jan
Jekel, Leon
Brackett, Alexandria
Payabvash, Sam
Ikuta, Ichiro
Lin, MingDe
Bousabarah, Khaled
Johnson, Michele H
Cui, Jin
Malhotra, Ajay
Omuro, Antonio
Turowski, Bernd
Aboian, Mariam S
Identifying clinically applicable machine learning algorithms for glioma segmentation: recent advances and discoveries
title Identifying clinically applicable machine learning algorithms for glioma segmentation: recent advances and discoveries
title_full Identifying clinically applicable machine learning algorithms for glioma segmentation: recent advances and discoveries
title_fullStr Identifying clinically applicable machine learning algorithms for glioma segmentation: recent advances and discoveries
title_full_unstemmed Identifying clinically applicable machine learning algorithms for glioma segmentation: recent advances and discoveries
title_short Identifying clinically applicable machine learning algorithms for glioma segmentation: recent advances and discoveries
title_sort identifying clinically applicable machine learning algorithms for glioma segmentation: recent advances and discoveries
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9446682/
https://www.ncbi.nlm.nih.gov/pubmed/36071926
http://dx.doi.org/10.1093/noajnl/vdac093
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