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Chromosome-Level Genome Assembly of Callitettix versicolor (Rice Spittlebug)
The spittlebug family Cercopidae (Hemiptera: Auchenorrhyncha: Cicadomorpha: Cercopoidea) is distributed worldwide. Some Cercopidae species are agricultural pests that are responsible for substantial economic damage. However, the genomics of spittlebugs has rarely been studied and their complete geno...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9447855/ https://www.ncbi.nlm.nih.gov/pubmed/35986913 http://dx.doi.org/10.1093/gbe/evac130 |
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author | Chen, Hong Qiao, Gexia Liang, Aiping |
author_facet | Chen, Hong Qiao, Gexia Liang, Aiping |
author_sort | Chen, Hong |
collection | PubMed |
description | The spittlebug family Cercopidae (Hemiptera: Auchenorrhyncha: Cicadomorpha: Cercopoidea) is distributed worldwide. Some Cercopidae species are agricultural pests that are responsible for substantial economic damage. However, the genomics of spittlebugs has rarely been studied and their complete genome assembly is yet to be reported. Here, we present the draft reference genome of Callitettix versicolor Fabricius (Hemiptera: Cercopidae) at the chromosome level. The assembled draft genome was 974.99 Mb with a contig N50 of 5.63 Mb, and the longest contig being 24.54 Mb. Hi-C technology was used to obtain an approximately 958.71 Mb chromosome-level genome on 10 pseudochromosomes, which covered 98.33% of the assembly. Repeat sequences accounted for 38.88% of the genomic sequences. A total of 21,937 protein-coding genes were detected in the reference genome, 89.97% of which were annotated in public databases. The high-quality reference genome of C. versicolor reported in this study will provide a valuable genomic resource for future ecological and evolutionary studies of spittlebugs. |
format | Online Article Text |
id | pubmed-9447855 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-94478552022-09-07 Chromosome-Level Genome Assembly of Callitettix versicolor (Rice Spittlebug) Chen, Hong Qiao, Gexia Liang, Aiping Genome Biol Evol Genome Report The spittlebug family Cercopidae (Hemiptera: Auchenorrhyncha: Cicadomorpha: Cercopoidea) is distributed worldwide. Some Cercopidae species are agricultural pests that are responsible for substantial economic damage. However, the genomics of spittlebugs has rarely been studied and their complete genome assembly is yet to be reported. Here, we present the draft reference genome of Callitettix versicolor Fabricius (Hemiptera: Cercopidae) at the chromosome level. The assembled draft genome was 974.99 Mb with a contig N50 of 5.63 Mb, and the longest contig being 24.54 Mb. Hi-C technology was used to obtain an approximately 958.71 Mb chromosome-level genome on 10 pseudochromosomes, which covered 98.33% of the assembly. Repeat sequences accounted for 38.88% of the genomic sequences. A total of 21,937 protein-coding genes were detected in the reference genome, 89.97% of which were annotated in public databases. The high-quality reference genome of C. versicolor reported in this study will provide a valuable genomic resource for future ecological and evolutionary studies of spittlebugs. Oxford University Press 2022-08-20 /pmc/articles/PMC9447855/ /pubmed/35986913 http://dx.doi.org/10.1093/gbe/evac130 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Genome Report Chen, Hong Qiao, Gexia Liang, Aiping Chromosome-Level Genome Assembly of Callitettix versicolor (Rice Spittlebug) |
title | Chromosome-Level Genome Assembly of Callitettix versicolor (Rice Spittlebug) |
title_full | Chromosome-Level Genome Assembly of Callitettix versicolor (Rice Spittlebug) |
title_fullStr | Chromosome-Level Genome Assembly of Callitettix versicolor (Rice Spittlebug) |
title_full_unstemmed | Chromosome-Level Genome Assembly of Callitettix versicolor (Rice Spittlebug) |
title_short | Chromosome-Level Genome Assembly of Callitettix versicolor (Rice Spittlebug) |
title_sort | chromosome-level genome assembly of callitettix versicolor (rice spittlebug) |
topic | Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9447855/ https://www.ncbi.nlm.nih.gov/pubmed/35986913 http://dx.doi.org/10.1093/gbe/evac130 |
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