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Characteristics and phylogenetic analysis of the complete chloroplast genome of Rosa glomerata (Rosaceae)
Rosa glomerata is a diffuse shrub belonging to Rosa sect. Synstylae. It is endemic to Southwest China and of high ornamental and economic value. However, its systematic position remains unclear. Here, the complete chloroplast genome of R. glomerata was assembled using high-throughput sequencing data...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9448402/ https://www.ncbi.nlm.nih.gov/pubmed/36082041 http://dx.doi.org/10.1080/23802359.2022.2107457 |
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author | Chen, Jiao-Feng Wang, Si-Qi Cai, Hou-Wen Zhu, Zhang-Ming |
author_facet | Chen, Jiao-Feng Wang, Si-Qi Cai, Hou-Wen Zhu, Zhang-Ming |
author_sort | Chen, Jiao-Feng |
collection | PubMed |
description | Rosa glomerata is a diffuse shrub belonging to Rosa sect. Synstylae. It is endemic to Southwest China and of high ornamental and economic value. However, its systematic position remains unclear. Here, the complete chloroplast genome of R. glomerata was assembled using high-throughput sequencing data. The cp genome is 157,064 bp in length with a large single-copy region (LSC) of 86,216 bp, a small single-copy region (SSC) of 18,752 bp, and a pair of inverted repeats (IRs) of 26,048 bp. The overall GC content is 37.2%. A total of 137 genes were annotated, including 90 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis revealed that R. glomerata is closely related to R. praelucens of R. sect. Microphyllae rather than species of R. sect. Synstylae. |
format | Online Article Text |
id | pubmed-9448402 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-94484022022-09-07 Characteristics and phylogenetic analysis of the complete chloroplast genome of Rosa glomerata (Rosaceae) Chen, Jiao-Feng Wang, Si-Qi Cai, Hou-Wen Zhu, Zhang-Ming Mitochondrial DNA B Resour Plastome Announcement Rosa glomerata is a diffuse shrub belonging to Rosa sect. Synstylae. It is endemic to Southwest China and of high ornamental and economic value. However, its systematic position remains unclear. Here, the complete chloroplast genome of R. glomerata was assembled using high-throughput sequencing data. The cp genome is 157,064 bp in length with a large single-copy region (LSC) of 86,216 bp, a small single-copy region (SSC) of 18,752 bp, and a pair of inverted repeats (IRs) of 26,048 bp. The overall GC content is 37.2%. A total of 137 genes were annotated, including 90 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis revealed that R. glomerata is closely related to R. praelucens of R. sect. Microphyllae rather than species of R. sect. Synstylae. Taylor & Francis 2022-09-02 /pmc/articles/PMC9448402/ /pubmed/36082041 http://dx.doi.org/10.1080/23802359.2022.2107457 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Chen, Jiao-Feng Wang, Si-Qi Cai, Hou-Wen Zhu, Zhang-Ming Characteristics and phylogenetic analysis of the complete chloroplast genome of Rosa glomerata (Rosaceae) |
title | Characteristics and phylogenetic analysis of the complete chloroplast genome of Rosa glomerata (Rosaceae) |
title_full | Characteristics and phylogenetic analysis of the complete chloroplast genome of Rosa glomerata (Rosaceae) |
title_fullStr | Characteristics and phylogenetic analysis of the complete chloroplast genome of Rosa glomerata (Rosaceae) |
title_full_unstemmed | Characteristics and phylogenetic analysis of the complete chloroplast genome of Rosa glomerata (Rosaceae) |
title_short | Characteristics and phylogenetic analysis of the complete chloroplast genome of Rosa glomerata (Rosaceae) |
title_sort | characteristics and phylogenetic analysis of the complete chloroplast genome of rosa glomerata (rosaceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9448402/ https://www.ncbi.nlm.nih.gov/pubmed/36082041 http://dx.doi.org/10.1080/23802359.2022.2107457 |
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