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ASL-BIDS, the brain imaging data structure extension for arterial spin labeling

Arterial spin labeling (ASL) is a non-invasive MRI technique that allows for quantitative measurement of cerebral perfusion. Incomplete or inaccurate reporting of acquisition parameters complicates quantification, analysis, and sharing of ASL data, particularly for studies across multiple sites, pla...

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Autores principales: Clement, Patricia, Castellaro, Marco, Okell, Thomas W., Thomas, David L., Vandemaele, Pieter, Elgayar, Sara, Oliver-Taylor, Aaron, Kirk, Thomas, Woods, Joseph G., Vos, Sjoerd B., Kuijer, Joost P. A., Achten, Eric, van Osch, Matthias J. P., Detre, John A., Lu, Hanzhang, Alsop, David C., Chappell, Michael A., Hernandez-Garcia, Luis, Petr, Jan, Mutsaerts, Henk J. M. M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9448788/
https://www.ncbi.nlm.nih.gov/pubmed/36068231
http://dx.doi.org/10.1038/s41597-022-01615-9
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author Clement, Patricia
Castellaro, Marco
Okell, Thomas W.
Thomas, David L.
Vandemaele, Pieter
Elgayar, Sara
Oliver-Taylor, Aaron
Kirk, Thomas
Woods, Joseph G.
Vos, Sjoerd B.
Kuijer, Joost P. A.
Achten, Eric
van Osch, Matthias J. P.
Detre, John A.
Lu, Hanzhang
Alsop, David C.
Chappell, Michael A.
Hernandez-Garcia, Luis
Petr, Jan
Mutsaerts, Henk J. M. M.
author_facet Clement, Patricia
Castellaro, Marco
Okell, Thomas W.
Thomas, David L.
Vandemaele, Pieter
Elgayar, Sara
Oliver-Taylor, Aaron
Kirk, Thomas
Woods, Joseph G.
Vos, Sjoerd B.
Kuijer, Joost P. A.
Achten, Eric
van Osch, Matthias J. P.
Detre, John A.
Lu, Hanzhang
Alsop, David C.
Chappell, Michael A.
Hernandez-Garcia, Luis
Petr, Jan
Mutsaerts, Henk J. M. M.
author_sort Clement, Patricia
collection PubMed
description Arterial spin labeling (ASL) is a non-invasive MRI technique that allows for quantitative measurement of cerebral perfusion. Incomplete or inaccurate reporting of acquisition parameters complicates quantification, analysis, and sharing of ASL data, particularly for studies across multiple sites, platforms, and ASL methods. There is a strong need for standardization of ASL data storage, including acquisition metadata. Recently, ASL-BIDS, the BIDS extension for ASL, was developed and released in BIDS 1.5.0. This manuscript provides an overview of the development and design choices of this first ASL-BIDS extension, which is mainly aimed at clinical ASL applications. Discussed are the structure of the ASL data, focussing on storage order of the ASL time series and implementation of calibration approaches, unit scaling, ASL-related BIDS fields, and storage of the labeling plane information. Additionally, an overview of ASL-BIDS compatible conversion and ASL analysis software and ASL example datasets in BIDS format is provided. We anticipate that large-scale adoption of ASL-BIDS will improve the reproducibility of ASL research.
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spelling pubmed-94487882022-09-08 ASL-BIDS, the brain imaging data structure extension for arterial spin labeling Clement, Patricia Castellaro, Marco Okell, Thomas W. Thomas, David L. Vandemaele, Pieter Elgayar, Sara Oliver-Taylor, Aaron Kirk, Thomas Woods, Joseph G. Vos, Sjoerd B. Kuijer, Joost P. A. Achten, Eric van Osch, Matthias J. P. Detre, John A. Lu, Hanzhang Alsop, David C. Chappell, Michael A. Hernandez-Garcia, Luis Petr, Jan Mutsaerts, Henk J. M. M. Sci Data Article Arterial spin labeling (ASL) is a non-invasive MRI technique that allows for quantitative measurement of cerebral perfusion. Incomplete or inaccurate reporting of acquisition parameters complicates quantification, analysis, and sharing of ASL data, particularly for studies across multiple sites, platforms, and ASL methods. There is a strong need for standardization of ASL data storage, including acquisition metadata. Recently, ASL-BIDS, the BIDS extension for ASL, was developed and released in BIDS 1.5.0. This manuscript provides an overview of the development and design choices of this first ASL-BIDS extension, which is mainly aimed at clinical ASL applications. Discussed are the structure of the ASL data, focussing on storage order of the ASL time series and implementation of calibration approaches, unit scaling, ASL-related BIDS fields, and storage of the labeling plane information. Additionally, an overview of ASL-BIDS compatible conversion and ASL analysis software and ASL example datasets in BIDS format is provided. We anticipate that large-scale adoption of ASL-BIDS will improve the reproducibility of ASL research. Nature Publishing Group UK 2022-09-06 /pmc/articles/PMC9448788/ /pubmed/36068231 http://dx.doi.org/10.1038/s41597-022-01615-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Clement, Patricia
Castellaro, Marco
Okell, Thomas W.
Thomas, David L.
Vandemaele, Pieter
Elgayar, Sara
Oliver-Taylor, Aaron
Kirk, Thomas
Woods, Joseph G.
Vos, Sjoerd B.
Kuijer, Joost P. A.
Achten, Eric
van Osch, Matthias J. P.
Detre, John A.
Lu, Hanzhang
Alsop, David C.
Chappell, Michael A.
Hernandez-Garcia, Luis
Petr, Jan
Mutsaerts, Henk J. M. M.
ASL-BIDS, the brain imaging data structure extension for arterial spin labeling
title ASL-BIDS, the brain imaging data structure extension for arterial spin labeling
title_full ASL-BIDS, the brain imaging data structure extension for arterial spin labeling
title_fullStr ASL-BIDS, the brain imaging data structure extension for arterial spin labeling
title_full_unstemmed ASL-BIDS, the brain imaging data structure extension for arterial spin labeling
title_short ASL-BIDS, the brain imaging data structure extension for arterial spin labeling
title_sort asl-bids, the brain imaging data structure extension for arterial spin labeling
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9448788/
https://www.ncbi.nlm.nih.gov/pubmed/36068231
http://dx.doi.org/10.1038/s41597-022-01615-9
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