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Identification of lactate metabolism-related subtypes and development of a lactate-related prognostic indicator of lung adenocarcinoma
Background: Increasing evidence supports that lactate plays an important role in tumor proliferation, invasion and within the tumor microenvironment (TME). This is particularly relevant in lung adenocarcinoma (LUAD). Therefore, there is a current need to investigate lactate metabolism in LUAD patien...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9449370/ https://www.ncbi.nlm.nih.gov/pubmed/36092870 http://dx.doi.org/10.3389/fgene.2022.949310 |
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author | Chang, Xiaoyan Lu, Tong Xu, Ran Wang, Chenghao Zhao, Jiaying Zhang, Linyou |
author_facet | Chang, Xiaoyan Lu, Tong Xu, Ran Wang, Chenghao Zhao, Jiaying Zhang, Linyou |
author_sort | Chang, Xiaoyan |
collection | PubMed |
description | Background: Increasing evidence supports that lactate plays an important role in tumor proliferation, invasion and within the tumor microenvironment (TME). This is particularly relevant in lung adenocarcinoma (LUAD). Therefore, there is a current need to investigate lactate metabolism in LUAD patients and how lactate metabolism is affected by different therapies. Methods: Data from LUAD patients were collected from The Cancer Genome Atlas (TCGA) and patients were divided into two subtypes according to 12 lactate metabolism-related genes to explore the effect of lactate metabolism in LUAD. We established a lactate-related prognostic indicator (LRPI) based on different gene expression profiles. Subsequently, we investigated associations between this LRPI and patient survival, molecular characteristics and response to therapy. Some analyses were conducted using the Genomics of Drug Sensitivity in Cancer (GDSC) database. Results: The two LUAD subtypes exhibited different levels of lactate metabolism, in which patients that displayed high lactate metabolism also had a worse prognosis and a poorer immune environment. Indeed, LRPI was shown to accurately predict the prognosis of LUAD patients. Patients with a high LRPI showed a poor prognosis coupled with high sensitivity to chemotherapy using GDSC data. Meanwhile, these patients exhibited a high responsiveness to immunotherapy in TMB (Tumor mutation burden) and TIDE (Tumor Immune Dysfunction and Exclusion) analyses. Conclusion: We validated the effect of lactate metabolism on the prognosis of LUAD patients and established a promising biomarker. LRPI can predict LUAD patient survival, molecular characteristics and response to therapy, which can aid the individualized treatment of LUAD patients. |
format | Online Article Text |
id | pubmed-9449370 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94493702022-09-08 Identification of lactate metabolism-related subtypes and development of a lactate-related prognostic indicator of lung adenocarcinoma Chang, Xiaoyan Lu, Tong Xu, Ran Wang, Chenghao Zhao, Jiaying Zhang, Linyou Front Genet Genetics Background: Increasing evidence supports that lactate plays an important role in tumor proliferation, invasion and within the tumor microenvironment (TME). This is particularly relevant in lung adenocarcinoma (LUAD). Therefore, there is a current need to investigate lactate metabolism in LUAD patients and how lactate metabolism is affected by different therapies. Methods: Data from LUAD patients were collected from The Cancer Genome Atlas (TCGA) and patients were divided into two subtypes according to 12 lactate metabolism-related genes to explore the effect of lactate metabolism in LUAD. We established a lactate-related prognostic indicator (LRPI) based on different gene expression profiles. Subsequently, we investigated associations between this LRPI and patient survival, molecular characteristics and response to therapy. Some analyses were conducted using the Genomics of Drug Sensitivity in Cancer (GDSC) database. Results: The two LUAD subtypes exhibited different levels of lactate metabolism, in which patients that displayed high lactate metabolism also had a worse prognosis and a poorer immune environment. Indeed, LRPI was shown to accurately predict the prognosis of LUAD patients. Patients with a high LRPI showed a poor prognosis coupled with high sensitivity to chemotherapy using GDSC data. Meanwhile, these patients exhibited a high responsiveness to immunotherapy in TMB (Tumor mutation burden) and TIDE (Tumor Immune Dysfunction and Exclusion) analyses. Conclusion: We validated the effect of lactate metabolism on the prognosis of LUAD patients and established a promising biomarker. LRPI can predict LUAD patient survival, molecular characteristics and response to therapy, which can aid the individualized treatment of LUAD patients. Frontiers Media S.A. 2022-08-24 /pmc/articles/PMC9449370/ /pubmed/36092870 http://dx.doi.org/10.3389/fgene.2022.949310 Text en Copyright © 2022 Chang, Lu, Xu, Wang, Zhao and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Chang, Xiaoyan Lu, Tong Xu, Ran Wang, Chenghao Zhao, Jiaying Zhang, Linyou Identification of lactate metabolism-related subtypes and development of a lactate-related prognostic indicator of lung adenocarcinoma |
title | Identification of lactate metabolism-related subtypes and development of a lactate-related prognostic indicator of lung adenocarcinoma |
title_full | Identification of lactate metabolism-related subtypes and development of a lactate-related prognostic indicator of lung adenocarcinoma |
title_fullStr | Identification of lactate metabolism-related subtypes and development of a lactate-related prognostic indicator of lung adenocarcinoma |
title_full_unstemmed | Identification of lactate metabolism-related subtypes and development of a lactate-related prognostic indicator of lung adenocarcinoma |
title_short | Identification of lactate metabolism-related subtypes and development of a lactate-related prognostic indicator of lung adenocarcinoma |
title_sort | identification of lactate metabolism-related subtypes and development of a lactate-related prognostic indicator of lung adenocarcinoma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9449370/ https://www.ncbi.nlm.nih.gov/pubmed/36092870 http://dx.doi.org/10.3389/fgene.2022.949310 |
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