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BoGDB: An integrative genomic database for Brassica oleracea L.

Brassica oleracea is an important species due to its high economic and nutritional value. Moreover, it is an ideal model for studies of morphology and genome evolution. In the genomic era, with massive “omics” data being generated, a high-efficiency platform is crucial to deepen our understanding of...

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Autores principales: Wang, Yong, Ji, Jialei, Fang, Zhiyuan, Yang, Limei, Zhuang, Mu, Zhang, Yangyong, Lv, Honghao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9449717/
https://www.ncbi.nlm.nih.gov/pubmed/36092435
http://dx.doi.org/10.3389/fpls.2022.852291
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author Wang, Yong
Ji, Jialei
Fang, Zhiyuan
Yang, Limei
Zhuang, Mu
Zhang, Yangyong
Lv, Honghao
author_facet Wang, Yong
Ji, Jialei
Fang, Zhiyuan
Yang, Limei
Zhuang, Mu
Zhang, Yangyong
Lv, Honghao
author_sort Wang, Yong
collection PubMed
description Brassica oleracea is an important species due to its high economic and nutritional value. Moreover, it is an ideal model for studies of morphology and genome evolution. In the genomic era, with massive “omics” data being generated, a high-efficiency platform is crucial to deepen our understanding of this important species. In this study, we developed the B. oleracea Genome Database (BoGDB) to consolidate genome, transcriptome, and metabolome data of B. oleracea cultivars, providing the first cross-omics platform for B. oleracea. In order to make full use of the multi-omics data, BoGDB integrates multiple functional modules, including “Gene Search,” “Heatmap,” “Genome Browser,” “Genome,” “Tools,” “Metabolic,” and “Variation,” which provides a user-friendly platform for genomic and genetic research and molecular design breeding of B. oleracea crops. In addition, BoGDB will continue to collect new genomic data of B. oleracea and integrate them into BoGDB when higher-quality genomic data are released.
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spelling pubmed-94497172022-09-08 BoGDB: An integrative genomic database for Brassica oleracea L. Wang, Yong Ji, Jialei Fang, Zhiyuan Yang, Limei Zhuang, Mu Zhang, Yangyong Lv, Honghao Front Plant Sci Plant Science Brassica oleracea is an important species due to its high economic and nutritional value. Moreover, it is an ideal model for studies of morphology and genome evolution. In the genomic era, with massive “omics” data being generated, a high-efficiency platform is crucial to deepen our understanding of this important species. In this study, we developed the B. oleracea Genome Database (BoGDB) to consolidate genome, transcriptome, and metabolome data of B. oleracea cultivars, providing the first cross-omics platform for B. oleracea. In order to make full use of the multi-omics data, BoGDB integrates multiple functional modules, including “Gene Search,” “Heatmap,” “Genome Browser,” “Genome,” “Tools,” “Metabolic,” and “Variation,” which provides a user-friendly platform for genomic and genetic research and molecular design breeding of B. oleracea crops. In addition, BoGDB will continue to collect new genomic data of B. oleracea and integrate them into BoGDB when higher-quality genomic data are released. Frontiers Media S.A. 2022-08-24 /pmc/articles/PMC9449717/ /pubmed/36092435 http://dx.doi.org/10.3389/fpls.2022.852291 Text en Copyright © 2022 Wang, Ji, Fang, Yang, Zhuang, Zhang and Lv. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Wang, Yong
Ji, Jialei
Fang, Zhiyuan
Yang, Limei
Zhuang, Mu
Zhang, Yangyong
Lv, Honghao
BoGDB: An integrative genomic database for Brassica oleracea L.
title BoGDB: An integrative genomic database for Brassica oleracea L.
title_full BoGDB: An integrative genomic database for Brassica oleracea L.
title_fullStr BoGDB: An integrative genomic database for Brassica oleracea L.
title_full_unstemmed BoGDB: An integrative genomic database for Brassica oleracea L.
title_short BoGDB: An integrative genomic database for Brassica oleracea L.
title_sort bogdb: an integrative genomic database for brassica oleracea l.
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9449717/
https://www.ncbi.nlm.nih.gov/pubmed/36092435
http://dx.doi.org/10.3389/fpls.2022.852291
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