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Assessment of the uncertainty and interpretability of deep learning models for mapping soil salinity using DeepQuantreg and game theory

This research introduces a new combined modelling approach for mapping soil salinity in the Minab plain in southern Iran. This study assessed the uncertainty (with 95% confidence limits) and interpretability of two deep learning (DL) models (deep boltzmann machine—DBM) and a one dimensional convolut...

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Autores principales: Mohammadifar, Aliakbar, Gholami, Hamid, Golzari, Shahram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9452570/
https://www.ncbi.nlm.nih.gov/pubmed/36071137
http://dx.doi.org/10.1038/s41598-022-19357-4
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author Mohammadifar, Aliakbar
Gholami, Hamid
Golzari, Shahram
author_facet Mohammadifar, Aliakbar
Gholami, Hamid
Golzari, Shahram
author_sort Mohammadifar, Aliakbar
collection PubMed
description This research introduces a new combined modelling approach for mapping soil salinity in the Minab plain in southern Iran. This study assessed the uncertainty (with 95% confidence limits) and interpretability of two deep learning (DL) models (deep boltzmann machine—DBM) and a one dimensional convolutional neural networks (1DCNN)—long short-term memory (LSTM) hybrid model (1DCNN-LSTM) for mapping soil salinity by applying DeepQuantreg and game theory (Shapely Additive exPlanations (SHAP) and permutation feature importance measure (PFIM)), respectively. Based on stepwise forward regression (SFR)—a technique for controlling factor selection, 18 of 47 potential controls were selected as effective factors. Inventory maps of soil salinity were generated based on 476 surface soil samples collected for measuring electrical conductivity (ECe). Based on Taylor diagrams, both DL models performed well (RMSE < 20%), but the 1DCNN-LSTM hybrid model performed slightly better than the DBM model. The uncertainty range associated with the ECe values predicted by both models estimated using DeepQuantilreg were similar (0–25 dS/m for the 1DCNN-LSTM hybrid model and 2–27 dS/m for DBM model). Based on the SFR and PFIM (permutation feature importance measure)—a measure in game theory, four controls (evaporation, sand content, precipitation and vertical distance to channel) were selected as the most important factors for soil salinity in the study area. The results of SHAP (Shapely Additive exPlanations)—the second measure used in game theory—suggested that five factors (evaporation, vertical distance to channel, sand content, cation exchange capacity (CEC) and digital elevation model (DEM)) have the strongest impact on model outputs. Overall, the methodology used in this study is recommend for applications in other regions for mapping environmental problems.
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spelling pubmed-94525702022-09-09 Assessment of the uncertainty and interpretability of deep learning models for mapping soil salinity using DeepQuantreg and game theory Mohammadifar, Aliakbar Gholami, Hamid Golzari, Shahram Sci Rep Article This research introduces a new combined modelling approach for mapping soil salinity in the Minab plain in southern Iran. This study assessed the uncertainty (with 95% confidence limits) and interpretability of two deep learning (DL) models (deep boltzmann machine—DBM) and a one dimensional convolutional neural networks (1DCNN)—long short-term memory (LSTM) hybrid model (1DCNN-LSTM) for mapping soil salinity by applying DeepQuantreg and game theory (Shapely Additive exPlanations (SHAP) and permutation feature importance measure (PFIM)), respectively. Based on stepwise forward regression (SFR)—a technique for controlling factor selection, 18 of 47 potential controls were selected as effective factors. Inventory maps of soil salinity were generated based on 476 surface soil samples collected for measuring electrical conductivity (ECe). Based on Taylor diagrams, both DL models performed well (RMSE < 20%), but the 1DCNN-LSTM hybrid model performed slightly better than the DBM model. The uncertainty range associated with the ECe values predicted by both models estimated using DeepQuantilreg were similar (0–25 dS/m for the 1DCNN-LSTM hybrid model and 2–27 dS/m for DBM model). Based on the SFR and PFIM (permutation feature importance measure)—a measure in game theory, four controls (evaporation, sand content, precipitation and vertical distance to channel) were selected as the most important factors for soil salinity in the study area. The results of SHAP (Shapely Additive exPlanations)—the second measure used in game theory—suggested that five factors (evaporation, vertical distance to channel, sand content, cation exchange capacity (CEC) and digital elevation model (DEM)) have the strongest impact on model outputs. Overall, the methodology used in this study is recommend for applications in other regions for mapping environmental problems. Nature Publishing Group UK 2022-09-07 /pmc/articles/PMC9452570/ /pubmed/36071137 http://dx.doi.org/10.1038/s41598-022-19357-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Mohammadifar, Aliakbar
Gholami, Hamid
Golzari, Shahram
Assessment of the uncertainty and interpretability of deep learning models for mapping soil salinity using DeepQuantreg and game theory
title Assessment of the uncertainty and interpretability of deep learning models for mapping soil salinity using DeepQuantreg and game theory
title_full Assessment of the uncertainty and interpretability of deep learning models for mapping soil salinity using DeepQuantreg and game theory
title_fullStr Assessment of the uncertainty and interpretability of deep learning models for mapping soil salinity using DeepQuantreg and game theory
title_full_unstemmed Assessment of the uncertainty and interpretability of deep learning models for mapping soil salinity using DeepQuantreg and game theory
title_short Assessment of the uncertainty and interpretability of deep learning models for mapping soil salinity using DeepQuantreg and game theory
title_sort assessment of the uncertainty and interpretability of deep learning models for mapping soil salinity using deepquantreg and game theory
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9452570/
https://www.ncbi.nlm.nih.gov/pubmed/36071137
http://dx.doi.org/10.1038/s41598-022-19357-4
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