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Feasibility and sensitivity study of radiomic features in photoacoustic imaging of patient-derived xenografts
Photoacoustic imaging is an increasingly popular method of exploring the tumour microenvironment, which can provide insight into tumour oxygenation status and potentially treatment response assessment. Currently, the measurements most commonly performed on such images are the mean and median of the...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9452574/ https://www.ncbi.nlm.nih.gov/pubmed/36071117 http://dx.doi.org/10.1038/s41598-022-19084-w |
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author | Escudero Sanchez, Lorena Brown, Emma Rundo, Leonardo Ursprung, Stephan Sala, Evis Bohndiek, Sarah E. Partarrieu, Ignacio Xavier |
author_facet | Escudero Sanchez, Lorena Brown, Emma Rundo, Leonardo Ursprung, Stephan Sala, Evis Bohndiek, Sarah E. Partarrieu, Ignacio Xavier |
author_sort | Escudero Sanchez, Lorena |
collection | PubMed |
description | Photoacoustic imaging is an increasingly popular method of exploring the tumour microenvironment, which can provide insight into tumour oxygenation status and potentially treatment response assessment. Currently, the measurements most commonly performed on such images are the mean and median of the pixel values of the tumour volumes of interest. We investigated expanding the set of measurements that can be extracted from these images by adding radiomic features. In particular, we found that Skewness was sensitive to differences between basal and luminal patient derived xenograft cancer models with an [Formula: see text] of 0.86, and that it was robust to variations in confounding factors such as reconstruction type and wavelength. We also built discriminant models with radiomic features that were correlated with the underlying tumour model and were independent from each other. We then ranked features by their importance in the model. Skewness was again found to be an important feature, as were 10th Percentile, Root Mean Squared, and several other texture-based features. In summary, this paper proposes a methodology to select radiomic features extracted from photoacoustic images that are robust to changes in acquisition and reconstruction parameters, and discusses features found to have discriminating power between the underlying tumour models in a pre-clinical dataset. |
format | Online Article Text |
id | pubmed-9452574 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-94525742022-09-09 Feasibility and sensitivity study of radiomic features in photoacoustic imaging of patient-derived xenografts Escudero Sanchez, Lorena Brown, Emma Rundo, Leonardo Ursprung, Stephan Sala, Evis Bohndiek, Sarah E. Partarrieu, Ignacio Xavier Sci Rep Article Photoacoustic imaging is an increasingly popular method of exploring the tumour microenvironment, which can provide insight into tumour oxygenation status and potentially treatment response assessment. Currently, the measurements most commonly performed on such images are the mean and median of the pixel values of the tumour volumes of interest. We investigated expanding the set of measurements that can be extracted from these images by adding radiomic features. In particular, we found that Skewness was sensitive to differences between basal and luminal patient derived xenograft cancer models with an [Formula: see text] of 0.86, and that it was robust to variations in confounding factors such as reconstruction type and wavelength. We also built discriminant models with radiomic features that were correlated with the underlying tumour model and were independent from each other. We then ranked features by their importance in the model. Skewness was again found to be an important feature, as were 10th Percentile, Root Mean Squared, and several other texture-based features. In summary, this paper proposes a methodology to select radiomic features extracted from photoacoustic images that are robust to changes in acquisition and reconstruction parameters, and discusses features found to have discriminating power between the underlying tumour models in a pre-clinical dataset. Nature Publishing Group UK 2022-09-07 /pmc/articles/PMC9452574/ /pubmed/36071117 http://dx.doi.org/10.1038/s41598-022-19084-w Text en © The Author(s) 2022, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Escudero Sanchez, Lorena Brown, Emma Rundo, Leonardo Ursprung, Stephan Sala, Evis Bohndiek, Sarah E. Partarrieu, Ignacio Xavier Feasibility and sensitivity study of radiomic features in photoacoustic imaging of patient-derived xenografts |
title | Feasibility and sensitivity study of radiomic features in photoacoustic imaging of patient-derived xenografts |
title_full | Feasibility and sensitivity study of radiomic features in photoacoustic imaging of patient-derived xenografts |
title_fullStr | Feasibility and sensitivity study of radiomic features in photoacoustic imaging of patient-derived xenografts |
title_full_unstemmed | Feasibility and sensitivity study of radiomic features in photoacoustic imaging of patient-derived xenografts |
title_short | Feasibility and sensitivity study of radiomic features in photoacoustic imaging of patient-derived xenografts |
title_sort | feasibility and sensitivity study of radiomic features in photoacoustic imaging of patient-derived xenografts |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9452574/ https://www.ncbi.nlm.nih.gov/pubmed/36071117 http://dx.doi.org/10.1038/s41598-022-19084-w |
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