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TRFs and tiRNAs sequence in acute rejection for vascularized composite allotransplantation
Illumina tRFs & tiRNAs-seq analysis was used to characterize the whole transcriptomes of acute rejection caused by vascularized composite allotransplantation (VCA). tRFs & tiRNAs-seq information for muscle samples with VCA was obtained and compared with similar information for same age- and...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9452673/ https://www.ncbi.nlm.nih.gov/pubmed/36071069 http://dx.doi.org/10.1038/s41597-022-01577-y |
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author | Fang, Yuan Li, Haibo Chen, Jingting Xiong, Yao Li, Xu Sun, Binbin Li, Shengli Zhou, Jianda Wang, Shoubao |
author_facet | Fang, Yuan Li, Haibo Chen, Jingting Xiong, Yao Li, Xu Sun, Binbin Li, Shengli Zhou, Jianda Wang, Shoubao |
author_sort | Fang, Yuan |
collection | PubMed |
description | Illumina tRFs & tiRNAs-seq analysis was used to characterize the whole transcriptomes of acute rejection caused by vascularized composite allotransplantation (VCA). tRFs & tiRNAs-seq information for muscle samples with VCA was obtained and compared with similar information for same age- and sex-matched healthy control subjects. The expression of 16 tRFs and tiRNAs, including 5 up-regulated target genes and 11 down-regulated target genes, were significantly different. According to bioinformatics analysis and reverse transcription quantitative polymerase chain reaction, we speculate that tiRNA-1-34-Glu-CTC-1 plays an important role in VCA-induced acute rejection by regulating the CACNA1D gene in the MAPK signaling pathway The findings provide the whole-transcriptome signatures of acute rejection for VCA, allowing further exploration of gene expression patterns/signatures associated with the various clinical symptoms of acute rejection for VCA. |
format | Online Article Text |
id | pubmed-9452673 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-94526732022-09-09 TRFs and tiRNAs sequence in acute rejection for vascularized composite allotransplantation Fang, Yuan Li, Haibo Chen, Jingting Xiong, Yao Li, Xu Sun, Binbin Li, Shengli Zhou, Jianda Wang, Shoubao Sci Data Data Descriptor Illumina tRFs & tiRNAs-seq analysis was used to characterize the whole transcriptomes of acute rejection caused by vascularized composite allotransplantation (VCA). tRFs & tiRNAs-seq information for muscle samples with VCA was obtained and compared with similar information for same age- and sex-matched healthy control subjects. The expression of 16 tRFs and tiRNAs, including 5 up-regulated target genes and 11 down-regulated target genes, were significantly different. According to bioinformatics analysis and reverse transcription quantitative polymerase chain reaction, we speculate that tiRNA-1-34-Glu-CTC-1 plays an important role in VCA-induced acute rejection by regulating the CACNA1D gene in the MAPK signaling pathway The findings provide the whole-transcriptome signatures of acute rejection for VCA, allowing further exploration of gene expression patterns/signatures associated with the various clinical symptoms of acute rejection for VCA. Nature Publishing Group UK 2022-09-07 /pmc/articles/PMC9452673/ /pubmed/36071069 http://dx.doi.org/10.1038/s41597-022-01577-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Fang, Yuan Li, Haibo Chen, Jingting Xiong, Yao Li, Xu Sun, Binbin Li, Shengli Zhou, Jianda Wang, Shoubao TRFs and tiRNAs sequence in acute rejection for vascularized composite allotransplantation |
title | TRFs and tiRNAs sequence in acute rejection for vascularized composite allotransplantation |
title_full | TRFs and tiRNAs sequence in acute rejection for vascularized composite allotransplantation |
title_fullStr | TRFs and tiRNAs sequence in acute rejection for vascularized composite allotransplantation |
title_full_unstemmed | TRFs and tiRNAs sequence in acute rejection for vascularized composite allotransplantation |
title_short | TRFs and tiRNAs sequence in acute rejection for vascularized composite allotransplantation |
title_sort | trfs and tirnas sequence in acute rejection for vascularized composite allotransplantation |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9452673/ https://www.ncbi.nlm.nih.gov/pubmed/36071069 http://dx.doi.org/10.1038/s41597-022-01577-y |
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