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Potential of ATR-FTIR–Chemometrics in Covid-19: Disease Recognition

[Image: see text] The COVID-19 pandemic has caused major disturbances to human health and economy on a global scale. Although vaccination campaigns and important advances in treatments have been developed, an early diagnosis is still crucial. While PCR is the golden standard for diagnosing SARS-CoV-...

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Autores principales: Calvo-Gomez, Octavio, Calvo, Hiram, Cedillo-Barrón, Leticia, Vivanco-Cid, Héctor, Alvarado-Orozco, Juan Manuel, Fernandez-Benavides, David Andrés, Arriaga-Pizano, Lourdes, Ferat-Osorio, Eduardo, Anda-Garay, Juan Carlos, López-Macias, Constantino, López, Mercedes G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9453986/
https://www.ncbi.nlm.nih.gov/pubmed/36092630
http://dx.doi.org/10.1021/acsomega.2c01374
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author Calvo-Gomez, Octavio
Calvo, Hiram
Cedillo-Barrón, Leticia
Vivanco-Cid, Héctor
Alvarado-Orozco, Juan Manuel
Fernandez-Benavides, David Andrés
Arriaga-Pizano, Lourdes
Ferat-Osorio, Eduardo
Anda-Garay, Juan Carlos
López-Macias, Constantino
López, Mercedes G.
author_facet Calvo-Gomez, Octavio
Calvo, Hiram
Cedillo-Barrón, Leticia
Vivanco-Cid, Héctor
Alvarado-Orozco, Juan Manuel
Fernandez-Benavides, David Andrés
Arriaga-Pizano, Lourdes
Ferat-Osorio, Eduardo
Anda-Garay, Juan Carlos
López-Macias, Constantino
López, Mercedes G.
author_sort Calvo-Gomez, Octavio
collection PubMed
description [Image: see text] The COVID-19 pandemic has caused major disturbances to human health and economy on a global scale. Although vaccination campaigns and important advances in treatments have been developed, an early diagnosis is still crucial. While PCR is the golden standard for diagnosing SARS-CoV-2 infection, rapid and low-cost techniques such as ATR-FTIR followed by multivariate analyses, where dimensions are reduced for obtaining valuable information from highly complex data sets, have been investigated. Most dimensionality reduction techniques attempt to discriminate and create new combinations of attributes prior to the classification stage; thus, the user needs to optimize a wealth of parameters before reaching reliable and valid outcomes. In this work, we developed a method for evaluating SARS-CoV-2 infection and COVID-19 disease severity on infrared spectra of sera, based on a rather simple feature selection technique (correlation-based feature subset selection). Dengue infection was also evaluated for assessing whether selectivity toward a different virus was possible with the same algorithm, although independent models were built for both viruses. High sensitivity (94.55%) and high specificity (98.44%) were obtained for assessing SARS-CoV-2 infection with our model; for severe COVID-19 disease classification, sensitivity is 70.97% and specificity is 94.95%; for mild disease classification, sensitivity is 33.33% and specificity is 94.64%; and for dengue infection assessment, sensitivity is 84.27% and specificity is 94.64%.
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spelling pubmed-94539862022-09-09 Potential of ATR-FTIR–Chemometrics in Covid-19: Disease Recognition Calvo-Gomez, Octavio Calvo, Hiram Cedillo-Barrón, Leticia Vivanco-Cid, Héctor Alvarado-Orozco, Juan Manuel Fernandez-Benavides, David Andrés Arriaga-Pizano, Lourdes Ferat-Osorio, Eduardo Anda-Garay, Juan Carlos López-Macias, Constantino López, Mercedes G. ACS Omega [Image: see text] The COVID-19 pandemic has caused major disturbances to human health and economy on a global scale. Although vaccination campaigns and important advances in treatments have been developed, an early diagnosis is still crucial. While PCR is the golden standard for diagnosing SARS-CoV-2 infection, rapid and low-cost techniques such as ATR-FTIR followed by multivariate analyses, where dimensions are reduced for obtaining valuable information from highly complex data sets, have been investigated. Most dimensionality reduction techniques attempt to discriminate and create new combinations of attributes prior to the classification stage; thus, the user needs to optimize a wealth of parameters before reaching reliable and valid outcomes. In this work, we developed a method for evaluating SARS-CoV-2 infection and COVID-19 disease severity on infrared spectra of sera, based on a rather simple feature selection technique (correlation-based feature subset selection). Dengue infection was also evaluated for assessing whether selectivity toward a different virus was possible with the same algorithm, although independent models were built for both viruses. High sensitivity (94.55%) and high specificity (98.44%) were obtained for assessing SARS-CoV-2 infection with our model; for severe COVID-19 disease classification, sensitivity is 70.97% and specificity is 94.95%; for mild disease classification, sensitivity is 33.33% and specificity is 94.64%; and for dengue infection assessment, sensitivity is 84.27% and specificity is 94.64%. American Chemical Society 2022-08-25 /pmc/articles/PMC9453986/ /pubmed/36092630 http://dx.doi.org/10.1021/acsomega.2c01374 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Calvo-Gomez, Octavio
Calvo, Hiram
Cedillo-Barrón, Leticia
Vivanco-Cid, Héctor
Alvarado-Orozco, Juan Manuel
Fernandez-Benavides, David Andrés
Arriaga-Pizano, Lourdes
Ferat-Osorio, Eduardo
Anda-Garay, Juan Carlos
López-Macias, Constantino
López, Mercedes G.
Potential of ATR-FTIR–Chemometrics in Covid-19: Disease Recognition
title Potential of ATR-FTIR–Chemometrics in Covid-19: Disease Recognition
title_full Potential of ATR-FTIR–Chemometrics in Covid-19: Disease Recognition
title_fullStr Potential of ATR-FTIR–Chemometrics in Covid-19: Disease Recognition
title_full_unstemmed Potential of ATR-FTIR–Chemometrics in Covid-19: Disease Recognition
title_short Potential of ATR-FTIR–Chemometrics in Covid-19: Disease Recognition
title_sort potential of atr-ftir–chemometrics in covid-19: disease recognition
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9453986/
https://www.ncbi.nlm.nih.gov/pubmed/36092630
http://dx.doi.org/10.1021/acsomega.2c01374
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