Cargando…
Potential of ATR-FTIR–Chemometrics in Covid-19: Disease Recognition
[Image: see text] The COVID-19 pandemic has caused major disturbances to human health and economy on a global scale. Although vaccination campaigns and important advances in treatments have been developed, an early diagnosis is still crucial. While PCR is the golden standard for diagnosing SARS-CoV-...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9453986/ https://www.ncbi.nlm.nih.gov/pubmed/36092630 http://dx.doi.org/10.1021/acsomega.2c01374 |
_version_ | 1784785253993283584 |
---|---|
author | Calvo-Gomez, Octavio Calvo, Hiram Cedillo-Barrón, Leticia Vivanco-Cid, Héctor Alvarado-Orozco, Juan Manuel Fernandez-Benavides, David Andrés Arriaga-Pizano, Lourdes Ferat-Osorio, Eduardo Anda-Garay, Juan Carlos López-Macias, Constantino López, Mercedes G. |
author_facet | Calvo-Gomez, Octavio Calvo, Hiram Cedillo-Barrón, Leticia Vivanco-Cid, Héctor Alvarado-Orozco, Juan Manuel Fernandez-Benavides, David Andrés Arriaga-Pizano, Lourdes Ferat-Osorio, Eduardo Anda-Garay, Juan Carlos López-Macias, Constantino López, Mercedes G. |
author_sort | Calvo-Gomez, Octavio |
collection | PubMed |
description | [Image: see text] The COVID-19 pandemic has caused major disturbances to human health and economy on a global scale. Although vaccination campaigns and important advances in treatments have been developed, an early diagnosis is still crucial. While PCR is the golden standard for diagnosing SARS-CoV-2 infection, rapid and low-cost techniques such as ATR-FTIR followed by multivariate analyses, where dimensions are reduced for obtaining valuable information from highly complex data sets, have been investigated. Most dimensionality reduction techniques attempt to discriminate and create new combinations of attributes prior to the classification stage; thus, the user needs to optimize a wealth of parameters before reaching reliable and valid outcomes. In this work, we developed a method for evaluating SARS-CoV-2 infection and COVID-19 disease severity on infrared spectra of sera, based on a rather simple feature selection technique (correlation-based feature subset selection). Dengue infection was also evaluated for assessing whether selectivity toward a different virus was possible with the same algorithm, although independent models were built for both viruses. High sensitivity (94.55%) and high specificity (98.44%) were obtained for assessing SARS-CoV-2 infection with our model; for severe COVID-19 disease classification, sensitivity is 70.97% and specificity is 94.95%; for mild disease classification, sensitivity is 33.33% and specificity is 94.64%; and for dengue infection assessment, sensitivity is 84.27% and specificity is 94.64%. |
format | Online Article Text |
id | pubmed-9453986 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-94539862022-09-09 Potential of ATR-FTIR–Chemometrics in Covid-19: Disease Recognition Calvo-Gomez, Octavio Calvo, Hiram Cedillo-Barrón, Leticia Vivanco-Cid, Héctor Alvarado-Orozco, Juan Manuel Fernandez-Benavides, David Andrés Arriaga-Pizano, Lourdes Ferat-Osorio, Eduardo Anda-Garay, Juan Carlos López-Macias, Constantino López, Mercedes G. ACS Omega [Image: see text] The COVID-19 pandemic has caused major disturbances to human health and economy on a global scale. Although vaccination campaigns and important advances in treatments have been developed, an early diagnosis is still crucial. While PCR is the golden standard for diagnosing SARS-CoV-2 infection, rapid and low-cost techniques such as ATR-FTIR followed by multivariate analyses, where dimensions are reduced for obtaining valuable information from highly complex data sets, have been investigated. Most dimensionality reduction techniques attempt to discriminate and create new combinations of attributes prior to the classification stage; thus, the user needs to optimize a wealth of parameters before reaching reliable and valid outcomes. In this work, we developed a method for evaluating SARS-CoV-2 infection and COVID-19 disease severity on infrared spectra of sera, based on a rather simple feature selection technique (correlation-based feature subset selection). Dengue infection was also evaluated for assessing whether selectivity toward a different virus was possible with the same algorithm, although independent models were built for both viruses. High sensitivity (94.55%) and high specificity (98.44%) were obtained for assessing SARS-CoV-2 infection with our model; for severe COVID-19 disease classification, sensitivity is 70.97% and specificity is 94.95%; for mild disease classification, sensitivity is 33.33% and specificity is 94.64%; and for dengue infection assessment, sensitivity is 84.27% and specificity is 94.64%. American Chemical Society 2022-08-25 /pmc/articles/PMC9453986/ /pubmed/36092630 http://dx.doi.org/10.1021/acsomega.2c01374 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Calvo-Gomez, Octavio Calvo, Hiram Cedillo-Barrón, Leticia Vivanco-Cid, Héctor Alvarado-Orozco, Juan Manuel Fernandez-Benavides, David Andrés Arriaga-Pizano, Lourdes Ferat-Osorio, Eduardo Anda-Garay, Juan Carlos López-Macias, Constantino López, Mercedes G. Potential of ATR-FTIR–Chemometrics in Covid-19: Disease Recognition |
title | Potential of ATR-FTIR–Chemometrics in Covid-19:
Disease Recognition |
title_full | Potential of ATR-FTIR–Chemometrics in Covid-19:
Disease Recognition |
title_fullStr | Potential of ATR-FTIR–Chemometrics in Covid-19:
Disease Recognition |
title_full_unstemmed | Potential of ATR-FTIR–Chemometrics in Covid-19:
Disease Recognition |
title_short | Potential of ATR-FTIR–Chemometrics in Covid-19:
Disease Recognition |
title_sort | potential of atr-ftir–chemometrics in covid-19:
disease recognition |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9453986/ https://www.ncbi.nlm.nih.gov/pubmed/36092630 http://dx.doi.org/10.1021/acsomega.2c01374 |
work_keys_str_mv | AT calvogomezoctavio potentialofatrftirchemometricsincovid19diseaserecognition AT calvohiram potentialofatrftirchemometricsincovid19diseaserecognition AT cedillobarronleticia potentialofatrftirchemometricsincovid19diseaserecognition AT vivancocidhector potentialofatrftirchemometricsincovid19diseaserecognition AT alvaradoorozcojuanmanuel potentialofatrftirchemometricsincovid19diseaserecognition AT fernandezbenavidesdavidandres potentialofatrftirchemometricsincovid19diseaserecognition AT arriagapizanolourdes potentialofatrftirchemometricsincovid19diseaserecognition AT feratosorioeduardo potentialofatrftirchemometricsincovid19diseaserecognition AT andagarayjuancarlos potentialofatrftirchemometricsincovid19diseaserecognition AT lopezmaciasconstantino potentialofatrftirchemometricsincovid19diseaserecognition AT lopezmercedesg potentialofatrftirchemometricsincovid19diseaserecognition |