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Automatic recognition of parasitic products in stool examination using object detection approach

BACKGROUND: Object detection is a new artificial intelligence approach to morphological recognition and labeling parasitic pathogens. Due to the lack of equipment and trained personnel, artificial intelligence innovation for searching various parasitic products in stool examination will enable patie...

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Autores principales: Naing, Kaung Myat, Boonsang, Siridech, Chuwongin, Santhad, Kittichai, Veerayuth, Tongloy, Teerawat, Prommongkol, Samrerng, Dekumyoy, Paron, Watthanakulpanich, Dorn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9455271/
https://www.ncbi.nlm.nih.gov/pubmed/36092001
http://dx.doi.org/10.7717/peerj-cs.1065
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author Naing, Kaung Myat
Boonsang, Siridech
Chuwongin, Santhad
Kittichai, Veerayuth
Tongloy, Teerawat
Prommongkol, Samrerng
Dekumyoy, Paron
Watthanakulpanich, Dorn
author_facet Naing, Kaung Myat
Boonsang, Siridech
Chuwongin, Santhad
Kittichai, Veerayuth
Tongloy, Teerawat
Prommongkol, Samrerng
Dekumyoy, Paron
Watthanakulpanich, Dorn
author_sort Naing, Kaung Myat
collection PubMed
description BACKGROUND: Object detection is a new artificial intelligence approach to morphological recognition and labeling parasitic pathogens. Due to the lack of equipment and trained personnel, artificial intelligence innovation for searching various parasitic products in stool examination will enable patients in remote areas of undeveloped countries to access diagnostic services. Because object detection is a developing approach that has been tested for its effectiveness in detecting intestinal parasitic objects such as protozoan cysts and helminthic eggs, it is suitable for use in rural areas where many factors supporting laboratory testing are still lacking. Based on the literatures, the YOLOv4-Tiny produces faster results and uses less memory with the support of low-end GPU devices. In comparison to the YOLOv3 and YOLOv3-Tiny models, this study aimed to propose an automated object detection approach, specifically the YOLOv4-Tiny model, for automatic recognition of intestinal parasitic products in stools. METHODS: To identify protozoan cysts and helminthic eggs in human feces, the three YOLO approaches; YOLOv4-Tiny, YOLOv3, and YOLOv3-Tiny, were trained to recognize 34 intestinal parasitic classes using training of image dataset. Feces were processed using a modified direct smear method adapted from the simple direct smear and the modified Kato-Katz methods. The image dataset was collected from intestinal parasitic objects discovered during stool examination and the three YOLO models were trained to recognize the image datasets. RESULTS: The non-maximum suppression technique and the threshold level were used to analyze the test dataset, yielding results of 96.25% precision and 95.08% sensitivity for YOLOv4-Tiny. Additionally, the YOLOv4-Tiny model had the best AUPRC performance of the three YOLO models, with a score of 0.963. CONCLUSION: This study, to our knowledge, was the first to detect protozoan cysts and helminthic eggs in the 34 classes of intestinal parasitic objects in human stools.
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spelling pubmed-94552712022-09-09 Automatic recognition of parasitic products in stool examination using object detection approach Naing, Kaung Myat Boonsang, Siridech Chuwongin, Santhad Kittichai, Veerayuth Tongloy, Teerawat Prommongkol, Samrerng Dekumyoy, Paron Watthanakulpanich, Dorn PeerJ Comput Sci Computational Biology BACKGROUND: Object detection is a new artificial intelligence approach to morphological recognition and labeling parasitic pathogens. Due to the lack of equipment and trained personnel, artificial intelligence innovation for searching various parasitic products in stool examination will enable patients in remote areas of undeveloped countries to access diagnostic services. Because object detection is a developing approach that has been tested for its effectiveness in detecting intestinal parasitic objects such as protozoan cysts and helminthic eggs, it is suitable for use in rural areas where many factors supporting laboratory testing are still lacking. Based on the literatures, the YOLOv4-Tiny produces faster results and uses less memory with the support of low-end GPU devices. In comparison to the YOLOv3 and YOLOv3-Tiny models, this study aimed to propose an automated object detection approach, specifically the YOLOv4-Tiny model, for automatic recognition of intestinal parasitic products in stools. METHODS: To identify protozoan cysts and helminthic eggs in human feces, the three YOLO approaches; YOLOv4-Tiny, YOLOv3, and YOLOv3-Tiny, were trained to recognize 34 intestinal parasitic classes using training of image dataset. Feces were processed using a modified direct smear method adapted from the simple direct smear and the modified Kato-Katz methods. The image dataset was collected from intestinal parasitic objects discovered during stool examination and the three YOLO models were trained to recognize the image datasets. RESULTS: The non-maximum suppression technique and the threshold level were used to analyze the test dataset, yielding results of 96.25% precision and 95.08% sensitivity for YOLOv4-Tiny. Additionally, the YOLOv4-Tiny model had the best AUPRC performance of the three YOLO models, with a score of 0.963. CONCLUSION: This study, to our knowledge, was the first to detect protozoan cysts and helminthic eggs in the 34 classes of intestinal parasitic objects in human stools. PeerJ Inc. 2022-08-17 /pmc/articles/PMC9455271/ /pubmed/36092001 http://dx.doi.org/10.7717/peerj-cs.1065 Text en ©2022 Naing et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Computational Biology
Naing, Kaung Myat
Boonsang, Siridech
Chuwongin, Santhad
Kittichai, Veerayuth
Tongloy, Teerawat
Prommongkol, Samrerng
Dekumyoy, Paron
Watthanakulpanich, Dorn
Automatic recognition of parasitic products in stool examination using object detection approach
title Automatic recognition of parasitic products in stool examination using object detection approach
title_full Automatic recognition of parasitic products in stool examination using object detection approach
title_fullStr Automatic recognition of parasitic products in stool examination using object detection approach
title_full_unstemmed Automatic recognition of parasitic products in stool examination using object detection approach
title_short Automatic recognition of parasitic products in stool examination using object detection approach
title_sort automatic recognition of parasitic products in stool examination using object detection approach
topic Computational Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9455271/
https://www.ncbi.nlm.nih.gov/pubmed/36092001
http://dx.doi.org/10.7717/peerj-cs.1065
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