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In Vitro Evaluation of In Silico Screening Approaches in Search for Selective ACE2 Binding Chemical Probes

New models for ACE2 receptor binding, based on QSAR and docking algorithms were developed, using XRD structural data and ChEMBL 26 database hits as training sets. The selectivity of the potential ACE2-binding ligands towards Neprilysin (NEP) and ACE was evaluated. The Enamine screening collection (3...

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Autores principales: Rayevsky, Alexey V., Poturai, Andrii S., Kravets, Iryna O., Pashenko, Alexander E., Borisova, Tatiana A., Tolstanova, Ganna M., Volochnyuk, Dmitriy M., Borysko, Petro O., Vadzyuk, Olga B., Alieksieieva, Diana O., Zabolotna, Yuliana, Klimchuk, Olga, Horvath, Dragos, Marcou, Gilles, Ryabukhin, Sergey V., Varnek, Alexandre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9458095/
https://www.ncbi.nlm.nih.gov/pubmed/36080168
http://dx.doi.org/10.3390/molecules27175400
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author Rayevsky, Alexey V.
Poturai, Andrii S.
Kravets, Iryna O.
Pashenko, Alexander E.
Borisova, Tatiana A.
Tolstanova, Ganna M.
Volochnyuk, Dmitriy M.
Borysko, Petro O.
Vadzyuk, Olga B.
Alieksieieva, Diana O.
Zabolotna, Yuliana
Klimchuk, Olga
Horvath, Dragos
Marcou, Gilles
Ryabukhin, Sergey V.
Varnek, Alexandre
author_facet Rayevsky, Alexey V.
Poturai, Andrii S.
Kravets, Iryna O.
Pashenko, Alexander E.
Borisova, Tatiana A.
Tolstanova, Ganna M.
Volochnyuk, Dmitriy M.
Borysko, Petro O.
Vadzyuk, Olga B.
Alieksieieva, Diana O.
Zabolotna, Yuliana
Klimchuk, Olga
Horvath, Dragos
Marcou, Gilles
Ryabukhin, Sergey V.
Varnek, Alexandre
author_sort Rayevsky, Alexey V.
collection PubMed
description New models for ACE2 receptor binding, based on QSAR and docking algorithms were developed, using XRD structural data and ChEMBL 26 database hits as training sets. The selectivity of the potential ACE2-binding ligands towards Neprilysin (NEP) and ACE was evaluated. The Enamine screening collection (3.2 million compounds) was virtually screened according to the above models, in order to find possible ACE2-chemical probes, useful for the study of SARS-CoV2-induced neurological disorders. An enzymology inhibition assay for ACE2 was optimized, and the combined diversified set of predicted selective ACE2-binding molecules from QSAR modeling, docking, and ultrafast docking was screened in vitro. The in vitro hits included two novel chemotypes suitable for further optimization.
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spelling pubmed-94580952022-09-09 In Vitro Evaluation of In Silico Screening Approaches in Search for Selective ACE2 Binding Chemical Probes Rayevsky, Alexey V. Poturai, Andrii S. Kravets, Iryna O. Pashenko, Alexander E. Borisova, Tatiana A. Tolstanova, Ganna M. Volochnyuk, Dmitriy M. Borysko, Petro O. Vadzyuk, Olga B. Alieksieieva, Diana O. Zabolotna, Yuliana Klimchuk, Olga Horvath, Dragos Marcou, Gilles Ryabukhin, Sergey V. Varnek, Alexandre Molecules Article New models for ACE2 receptor binding, based on QSAR and docking algorithms were developed, using XRD structural data and ChEMBL 26 database hits as training sets. The selectivity of the potential ACE2-binding ligands towards Neprilysin (NEP) and ACE was evaluated. The Enamine screening collection (3.2 million compounds) was virtually screened according to the above models, in order to find possible ACE2-chemical probes, useful for the study of SARS-CoV2-induced neurological disorders. An enzymology inhibition assay for ACE2 was optimized, and the combined diversified set of predicted selective ACE2-binding molecules from QSAR modeling, docking, and ultrafast docking was screened in vitro. The in vitro hits included two novel chemotypes suitable for further optimization. MDPI 2022-08-24 /pmc/articles/PMC9458095/ /pubmed/36080168 http://dx.doi.org/10.3390/molecules27175400 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Rayevsky, Alexey V.
Poturai, Andrii S.
Kravets, Iryna O.
Pashenko, Alexander E.
Borisova, Tatiana A.
Tolstanova, Ganna M.
Volochnyuk, Dmitriy M.
Borysko, Petro O.
Vadzyuk, Olga B.
Alieksieieva, Diana O.
Zabolotna, Yuliana
Klimchuk, Olga
Horvath, Dragos
Marcou, Gilles
Ryabukhin, Sergey V.
Varnek, Alexandre
In Vitro Evaluation of In Silico Screening Approaches in Search for Selective ACE2 Binding Chemical Probes
title In Vitro Evaluation of In Silico Screening Approaches in Search for Selective ACE2 Binding Chemical Probes
title_full In Vitro Evaluation of In Silico Screening Approaches in Search for Selective ACE2 Binding Chemical Probes
title_fullStr In Vitro Evaluation of In Silico Screening Approaches in Search for Selective ACE2 Binding Chemical Probes
title_full_unstemmed In Vitro Evaluation of In Silico Screening Approaches in Search for Selective ACE2 Binding Chemical Probes
title_short In Vitro Evaluation of In Silico Screening Approaches in Search for Selective ACE2 Binding Chemical Probes
title_sort in vitro evaluation of in silico screening approaches in search for selective ace2 binding chemical probes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9458095/
https://www.ncbi.nlm.nih.gov/pubmed/36080168
http://dx.doi.org/10.3390/molecules27175400
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