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Draft genome sequencing data of the moderately halophilic bacterium, Allobacillus halotolerans SKP2-8 from shrimp paste (ka-pi)

A moderately halophilic, Gram-stain-positive, spore-forming rod-shaped bacterium, designated SKP2-8 was isolated from a traditional fermented shrimp paste (Ka-pi) collected from the market in Samut Sakhon province, Thailand. This isolate SKP2-8 was closely related to Allobacillus halotolerans LMG 24...

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Autores principales: Kingkaew, Engkarat, Yiamsombut, Supalurk, Poothong, Saranporn, Shi, Wenyu, Wu, Linhuan, Ma, Juncai, Tanasupawat, Somboon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9459419/
https://www.ncbi.nlm.nih.gov/pubmed/36091474
http://dx.doi.org/10.1016/j.dib.2022.108549
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author Kingkaew, Engkarat
Yiamsombut, Supalurk
Poothong, Saranporn
Shi, Wenyu
Wu, Linhuan
Ma, Juncai
Tanasupawat, Somboon
author_facet Kingkaew, Engkarat
Yiamsombut, Supalurk
Poothong, Saranporn
Shi, Wenyu
Wu, Linhuan
Ma, Juncai
Tanasupawat, Somboon
author_sort Kingkaew, Engkarat
collection PubMed
description A moderately halophilic, Gram-stain-positive, spore-forming rod-shaped bacterium, designated SKP2-8 was isolated from a traditional fermented shrimp paste (Ka-pi) collected from the market in Samut Sakhon province, Thailand. This isolate SKP2-8 was closely related to Allobacillus halotolerans LMG 24826(T) with 99.56% similarity based on 16S rRNA gene sequence. The draft genome of SKP2-8 was 2.53 Mb with 2,515 coding sequences with an average G+C content of 39.5 mol%. The ANIb, ANIm, AAI and the digital DNA-DNA hybridization values of isolate SKP2-8 were 97.22%, 97.64%, 97.75% and 78.0%, respectively, compared with A. halotolerans LMG 24826(T). Based on the phenotypic characteristics, DNA-DNA relatedness and phylogenomic analysis, it was identified as Allobacillus halotolerans. The genome sequence data of this isolate provide information for further analysis of the potential biotechnological use of this microorganism and guide the characterization. The draft genome was deposited at DDBJ/ EMBL/GenBank (DNA Databank of Japan/European Molecular Biology Laboratory/Genbank) (VMHF00000000).
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spelling pubmed-94594192022-09-10 Draft genome sequencing data of the moderately halophilic bacterium, Allobacillus halotolerans SKP2-8 from shrimp paste (ka-pi) Kingkaew, Engkarat Yiamsombut, Supalurk Poothong, Saranporn Shi, Wenyu Wu, Linhuan Ma, Juncai Tanasupawat, Somboon Data Brief Data Article A moderately halophilic, Gram-stain-positive, spore-forming rod-shaped bacterium, designated SKP2-8 was isolated from a traditional fermented shrimp paste (Ka-pi) collected from the market in Samut Sakhon province, Thailand. This isolate SKP2-8 was closely related to Allobacillus halotolerans LMG 24826(T) with 99.56% similarity based on 16S rRNA gene sequence. The draft genome of SKP2-8 was 2.53 Mb with 2,515 coding sequences with an average G+C content of 39.5 mol%. The ANIb, ANIm, AAI and the digital DNA-DNA hybridization values of isolate SKP2-8 were 97.22%, 97.64%, 97.75% and 78.0%, respectively, compared with A. halotolerans LMG 24826(T). Based on the phenotypic characteristics, DNA-DNA relatedness and phylogenomic analysis, it was identified as Allobacillus halotolerans. The genome sequence data of this isolate provide information for further analysis of the potential biotechnological use of this microorganism and guide the characterization. The draft genome was deposited at DDBJ/ EMBL/GenBank (DNA Databank of Japan/European Molecular Biology Laboratory/Genbank) (VMHF00000000). Elsevier 2022-08-22 /pmc/articles/PMC9459419/ /pubmed/36091474 http://dx.doi.org/10.1016/j.dib.2022.108549 Text en © 2022 The Author(s). Published by Elsevier Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Kingkaew, Engkarat
Yiamsombut, Supalurk
Poothong, Saranporn
Shi, Wenyu
Wu, Linhuan
Ma, Juncai
Tanasupawat, Somboon
Draft genome sequencing data of the moderately halophilic bacterium, Allobacillus halotolerans SKP2-8 from shrimp paste (ka-pi)
title Draft genome sequencing data of the moderately halophilic bacterium, Allobacillus halotolerans SKP2-8 from shrimp paste (ka-pi)
title_full Draft genome sequencing data of the moderately halophilic bacterium, Allobacillus halotolerans SKP2-8 from shrimp paste (ka-pi)
title_fullStr Draft genome sequencing data of the moderately halophilic bacterium, Allobacillus halotolerans SKP2-8 from shrimp paste (ka-pi)
title_full_unstemmed Draft genome sequencing data of the moderately halophilic bacterium, Allobacillus halotolerans SKP2-8 from shrimp paste (ka-pi)
title_short Draft genome sequencing data of the moderately halophilic bacterium, Allobacillus halotolerans SKP2-8 from shrimp paste (ka-pi)
title_sort draft genome sequencing data of the moderately halophilic bacterium, allobacillus halotolerans skp2-8 from shrimp paste (ka-pi)
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9459419/
https://www.ncbi.nlm.nih.gov/pubmed/36091474
http://dx.doi.org/10.1016/j.dib.2022.108549
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