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Feasibility of using CT radiomic signatures for predicting CD8-T cell infiltration and PD-L1 expression in renal cell carcinoma
OBJECTIVES: To identify computed tomography (CT)-based radiomic signatures of cluster of differentiation 8 (CD8)-T cell infiltration and programmed cell death ligand 1 (PD-L1) expression levels in patients with clear-cell renal cell carcinoma (ccRCC). METHODS: Seventy-eight patients with pathologica...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9460152/ https://www.ncbi.nlm.nih.gov/pubmed/36090617 http://dx.doi.org/10.1016/j.ejro.2022.100440 |
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author | Varghese, Bino Cen, Steven Zahoor, Haris Siddiqui, Imran Aron, Manju Sali, Akash Rhie, Suhn Lei, Xiaomeng Rivas, Marielena Liu, Derek Hwang, Darryl Quinn, David Desai, Mihir Vaishampayan, Ulka Gill, Inderbir Duddalwar, Vinay |
author_facet | Varghese, Bino Cen, Steven Zahoor, Haris Siddiqui, Imran Aron, Manju Sali, Akash Rhie, Suhn Lei, Xiaomeng Rivas, Marielena Liu, Derek Hwang, Darryl Quinn, David Desai, Mihir Vaishampayan, Ulka Gill, Inderbir Duddalwar, Vinay |
author_sort | Varghese, Bino |
collection | PubMed |
description | OBJECTIVES: To identify computed tomography (CT)-based radiomic signatures of cluster of differentiation 8 (CD8)-T cell infiltration and programmed cell death ligand 1 (PD-L1) expression levels in patients with clear-cell renal cell carcinoma (ccRCC). METHODS: Seventy-eight patients with pathologically confirmed localized ccRCC, preoperative multiphase CT and tumor resection specimens were enrolled in this retrospective study. Regions of interest (ROI) of the ccRCC volume were manually segmented from the CT images and processed using a radiomics panel comprising of 1708 metrics. The extracted metrics were used as inputs to three machine learning classifiers: Random Forest, AdaBoost, and ElasticNet to create radiomic signatures for CD8-T cell infiltration and PD-L1 expression, respectively. RESULTS: Using a cut-off of 80 lymphocytes per high power field, 59 % were classified to CD8 highly infiltrated tumors and 41 % were CD8 non highly infiltrated tumors, respectively. An ElasticNet classifier discriminated between these two groups of CD8-T cells with an AUC of 0.68 (95 % CI, 0.55–0.80). In addition, based on tumor proportion score with a cut-off of > 1 % tumor cells expressing PD-L1, 76 % were PD-L1 positive and 24 % were PD-L1 negative. An Adaboost classifier discriminated between PD-L1 positive and PD-L1 negative tumors with an AUC of 0.8 95 % CI: (0.66, 0.95). 3D radiomics metrics of graylevel co-occurrence matrix (GLCM) and graylevel run-length matrix (GLRLM) metrics drove the performance for CD8-Tcell and PD-L1 classification, respectively. CONCLUSIONS: CT-radiomic signatures can differentiate tumors with high CD8-T cell infiltration with moderate accuracy and positive PD-L1 expression with good accuracy in ccRCC. |
format | Online Article Text |
id | pubmed-9460152 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-94601522022-09-10 Feasibility of using CT radiomic signatures for predicting CD8-T cell infiltration and PD-L1 expression in renal cell carcinoma Varghese, Bino Cen, Steven Zahoor, Haris Siddiqui, Imran Aron, Manju Sali, Akash Rhie, Suhn Lei, Xiaomeng Rivas, Marielena Liu, Derek Hwang, Darryl Quinn, David Desai, Mihir Vaishampayan, Ulka Gill, Inderbir Duddalwar, Vinay Eur J Radiol Open Article OBJECTIVES: To identify computed tomography (CT)-based radiomic signatures of cluster of differentiation 8 (CD8)-T cell infiltration and programmed cell death ligand 1 (PD-L1) expression levels in patients with clear-cell renal cell carcinoma (ccRCC). METHODS: Seventy-eight patients with pathologically confirmed localized ccRCC, preoperative multiphase CT and tumor resection specimens were enrolled in this retrospective study. Regions of interest (ROI) of the ccRCC volume were manually segmented from the CT images and processed using a radiomics panel comprising of 1708 metrics. The extracted metrics were used as inputs to three machine learning classifiers: Random Forest, AdaBoost, and ElasticNet to create radiomic signatures for CD8-T cell infiltration and PD-L1 expression, respectively. RESULTS: Using a cut-off of 80 lymphocytes per high power field, 59 % were classified to CD8 highly infiltrated tumors and 41 % were CD8 non highly infiltrated tumors, respectively. An ElasticNet classifier discriminated between these two groups of CD8-T cells with an AUC of 0.68 (95 % CI, 0.55–0.80). In addition, based on tumor proportion score with a cut-off of > 1 % tumor cells expressing PD-L1, 76 % were PD-L1 positive and 24 % were PD-L1 negative. An Adaboost classifier discriminated between PD-L1 positive and PD-L1 negative tumors with an AUC of 0.8 95 % CI: (0.66, 0.95). 3D radiomics metrics of graylevel co-occurrence matrix (GLCM) and graylevel run-length matrix (GLRLM) metrics drove the performance for CD8-Tcell and PD-L1 classification, respectively. CONCLUSIONS: CT-radiomic signatures can differentiate tumors with high CD8-T cell infiltration with moderate accuracy and positive PD-L1 expression with good accuracy in ccRCC. Elsevier 2022-09-02 /pmc/articles/PMC9460152/ /pubmed/36090617 http://dx.doi.org/10.1016/j.ejro.2022.100440 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Varghese, Bino Cen, Steven Zahoor, Haris Siddiqui, Imran Aron, Manju Sali, Akash Rhie, Suhn Lei, Xiaomeng Rivas, Marielena Liu, Derek Hwang, Darryl Quinn, David Desai, Mihir Vaishampayan, Ulka Gill, Inderbir Duddalwar, Vinay Feasibility of using CT radiomic signatures for predicting CD8-T cell infiltration and PD-L1 expression in renal cell carcinoma |
title | Feasibility of using CT radiomic signatures for predicting CD8-T cell infiltration and PD-L1 expression in renal cell carcinoma |
title_full | Feasibility of using CT radiomic signatures for predicting CD8-T cell infiltration and PD-L1 expression in renal cell carcinoma |
title_fullStr | Feasibility of using CT radiomic signatures for predicting CD8-T cell infiltration and PD-L1 expression in renal cell carcinoma |
title_full_unstemmed | Feasibility of using CT radiomic signatures for predicting CD8-T cell infiltration and PD-L1 expression in renal cell carcinoma |
title_short | Feasibility of using CT radiomic signatures for predicting CD8-T cell infiltration and PD-L1 expression in renal cell carcinoma |
title_sort | feasibility of using ct radiomic signatures for predicting cd8-t cell infiltration and pd-l1 expression in renal cell carcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9460152/ https://www.ncbi.nlm.nih.gov/pubmed/36090617 http://dx.doi.org/10.1016/j.ejro.2022.100440 |
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