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Designing and implementing a data model for describing environmental monitoring and research sites

With new technological advancements and increasing demands of open data in environmental sciences, the requirements for data are increasing in a variety of ways. Having machine and human readable documentation about environmental research and monitoring sites available online is one of them. The Dyn...

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Autores principales: Wohner, Christoph, Peterseil, Johannes, Klug, Hermann
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9461184/
https://www.ncbi.nlm.nih.gov/pubmed/36105745
http://dx.doi.org/10.1016/j.ecoinf.2022.101708
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author Wohner, Christoph
Peterseil, Johannes
Klug, Hermann
author_facet Wohner, Christoph
Peterseil, Johannes
Klug, Hermann
author_sort Wohner, Christoph
collection PubMed
description With new technological advancements and increasing demands of open data in environmental sciences, the requirements for data are increasing in a variety of ways. Having machine and human readable documentation about environmental research and monitoring sites available online is one of them. The Dynamic Ecological Information Management System – Site and Dataset Registry (DEIMS-SDR, https://www.deims.org/) is a research and monitoring site registry that allows the description of in-situ observation or experimental sites, generating persistent, unique and resolvable identifiers for each site. The aim of DEIMS-SDR is to collect site information in a catalogue describing a wide range of sites across the globe, providing information including each site's location, ecosystems, facilities, measured parameters and research themes and enabling that standardised information to be openly available. This article describes the outcomes of the revision of its data model, the conceptual considerations behind it and how it is implemented. These conceptual considerations also encompass the definition of what we call the “onion model of site data interoperability” – a fundamental concept for the design of site data models against the backdrop of data interoperability. Furthermore, we illustrate the capabilities of the revised data model and provide an overview of common data formats for the description of sites, current initiatives driving the harmonisation of descriptions and the outlook of future developments.
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spelling pubmed-94611842022-09-12 Designing and implementing a data model for describing environmental monitoring and research sites Wohner, Christoph Peterseil, Johannes Klug, Hermann Ecol Inform Article With new technological advancements and increasing demands of open data in environmental sciences, the requirements for data are increasing in a variety of ways. Having machine and human readable documentation about environmental research and monitoring sites available online is one of them. The Dynamic Ecological Information Management System – Site and Dataset Registry (DEIMS-SDR, https://www.deims.org/) is a research and monitoring site registry that allows the description of in-situ observation or experimental sites, generating persistent, unique and resolvable identifiers for each site. The aim of DEIMS-SDR is to collect site information in a catalogue describing a wide range of sites across the globe, providing information including each site's location, ecosystems, facilities, measured parameters and research themes and enabling that standardised information to be openly available. This article describes the outcomes of the revision of its data model, the conceptual considerations behind it and how it is implemented. These conceptual considerations also encompass the definition of what we call the “onion model of site data interoperability” – a fundamental concept for the design of site data models against the backdrop of data interoperability. Furthermore, we illustrate the capabilities of the revised data model and provide an overview of common data formats for the description of sites, current initiatives driving the harmonisation of descriptions and the outlook of future developments. Elsevier 2022-09 /pmc/articles/PMC9461184/ /pubmed/36105745 http://dx.doi.org/10.1016/j.ecoinf.2022.101708 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Wohner, Christoph
Peterseil, Johannes
Klug, Hermann
Designing and implementing a data model for describing environmental monitoring and research sites
title Designing and implementing a data model for describing environmental monitoring and research sites
title_full Designing and implementing a data model for describing environmental monitoring and research sites
title_fullStr Designing and implementing a data model for describing environmental monitoring and research sites
title_full_unstemmed Designing and implementing a data model for describing environmental monitoring and research sites
title_short Designing and implementing a data model for describing environmental monitoring and research sites
title_sort designing and implementing a data model for describing environmental monitoring and research sites
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9461184/
https://www.ncbi.nlm.nih.gov/pubmed/36105745
http://dx.doi.org/10.1016/j.ecoinf.2022.101708
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