Cargando…

Comprehensive analysis of GINS subunits prognostic value and ceRNA network in sarcoma

Background: The GINS complex, composed of GINS1/2/3/4 subunits, is an essential structure of Cdc45-MCM-GINS (CMG) helicase and plays a vital role in establishing the DNA replication fork and chromosome replication. Meanwhile, GINS genes have been associated with the poor prognosis of various maligna...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhou, Chuqiao, Chen, Zhuoyuan, Xiao, Bo, Xiang, Cheng, Li, Aoyu, Zhao, Ziyue, Li, Hui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9462653/
https://www.ncbi.nlm.nih.gov/pubmed/36092720
http://dx.doi.org/10.3389/fcell.2022.951363
_version_ 1784787234834087936
author Zhou, Chuqiao
Chen, Zhuoyuan
Xiao, Bo
Xiang, Cheng
Li, Aoyu
Zhao, Ziyue
Li, Hui
author_facet Zhou, Chuqiao
Chen, Zhuoyuan
Xiao, Bo
Xiang, Cheng
Li, Aoyu
Zhao, Ziyue
Li, Hui
author_sort Zhou, Chuqiao
collection PubMed
description Background: The GINS complex, composed of GINS1/2/3/4 subunits, is an essential structure of Cdc45-MCM-GINS (CMG) helicase and plays a vital role in establishing the DNA replication fork and chromosome replication. Meanwhile, GINS genes have been associated with the poor prognosis of various malignancies. However, the abnormal expression of GINS genes and their diagnostic and prognostic value in sarcomas (SARC) remain unclear. Methods: Oncomine, Gene Expression Profiling Interactive Analysis (GEPIA), Kaplan-Meier Plotter, Cancer cell line encyclopedia (CCLE), The University of Alabama at Birmingham Cancer Data Analysis Portal (UALCAN), R studio, and Tumor Immune Estimation Resource (TIMER) were used to analyze the expression profiles, prognostic value, biological function, ceRNA, and immune infiltration associated with GINS genes in sarcomas. Results: We found that GINS1/2/3/4 genes exhibited significantly upregulated transcription levels in SARC samples compared to non-tumor tissues and exhibited high expression levels in sarcoma cell lines. In addition, SARC patients with increased expression levels of GINS1/2/3/4 showed poorer survival rates. Immune infiltration analysis showed that GINS subunits were closely associated with the infiltration of immune cells in sarcomas. Conclusion: Our research identified GINS subunits as potential diagnostic and prognostic biological targets in SARC and elucidated their underlying effects in the genesis and progression of SARC. These results may provide new opportunities and research directions for targeted sarcoma therapy.
format Online
Article
Text
id pubmed-9462653
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-94626532022-09-10 Comprehensive analysis of GINS subunits prognostic value and ceRNA network in sarcoma Zhou, Chuqiao Chen, Zhuoyuan Xiao, Bo Xiang, Cheng Li, Aoyu Zhao, Ziyue Li, Hui Front Cell Dev Biol Cell and Developmental Biology Background: The GINS complex, composed of GINS1/2/3/4 subunits, is an essential structure of Cdc45-MCM-GINS (CMG) helicase and plays a vital role in establishing the DNA replication fork and chromosome replication. Meanwhile, GINS genes have been associated with the poor prognosis of various malignancies. However, the abnormal expression of GINS genes and their diagnostic and prognostic value in sarcomas (SARC) remain unclear. Methods: Oncomine, Gene Expression Profiling Interactive Analysis (GEPIA), Kaplan-Meier Plotter, Cancer cell line encyclopedia (CCLE), The University of Alabama at Birmingham Cancer Data Analysis Portal (UALCAN), R studio, and Tumor Immune Estimation Resource (TIMER) were used to analyze the expression profiles, prognostic value, biological function, ceRNA, and immune infiltration associated with GINS genes in sarcomas. Results: We found that GINS1/2/3/4 genes exhibited significantly upregulated transcription levels in SARC samples compared to non-tumor tissues and exhibited high expression levels in sarcoma cell lines. In addition, SARC patients with increased expression levels of GINS1/2/3/4 showed poorer survival rates. Immune infiltration analysis showed that GINS subunits were closely associated with the infiltration of immune cells in sarcomas. Conclusion: Our research identified GINS subunits as potential diagnostic and prognostic biological targets in SARC and elucidated their underlying effects in the genesis and progression of SARC. These results may provide new opportunities and research directions for targeted sarcoma therapy. Frontiers Media S.A. 2022-08-26 /pmc/articles/PMC9462653/ /pubmed/36092720 http://dx.doi.org/10.3389/fcell.2022.951363 Text en Copyright © 2022 Zhou, Chen, Xiao, Xiang, Li, Zhao and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Zhou, Chuqiao
Chen, Zhuoyuan
Xiao, Bo
Xiang, Cheng
Li, Aoyu
Zhao, Ziyue
Li, Hui
Comprehensive analysis of GINS subunits prognostic value and ceRNA network in sarcoma
title Comprehensive analysis of GINS subunits prognostic value and ceRNA network in sarcoma
title_full Comprehensive analysis of GINS subunits prognostic value and ceRNA network in sarcoma
title_fullStr Comprehensive analysis of GINS subunits prognostic value and ceRNA network in sarcoma
title_full_unstemmed Comprehensive analysis of GINS subunits prognostic value and ceRNA network in sarcoma
title_short Comprehensive analysis of GINS subunits prognostic value and ceRNA network in sarcoma
title_sort comprehensive analysis of gins subunits prognostic value and cerna network in sarcoma
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9462653/
https://www.ncbi.nlm.nih.gov/pubmed/36092720
http://dx.doi.org/10.3389/fcell.2022.951363
work_keys_str_mv AT zhouchuqiao comprehensiveanalysisofginssubunitsprognosticvalueandcernanetworkinsarcoma
AT chenzhuoyuan comprehensiveanalysisofginssubunitsprognosticvalueandcernanetworkinsarcoma
AT xiaobo comprehensiveanalysisofginssubunitsprognosticvalueandcernanetworkinsarcoma
AT xiangcheng comprehensiveanalysisofginssubunitsprognosticvalueandcernanetworkinsarcoma
AT liaoyu comprehensiveanalysisofginssubunitsprognosticvalueandcernanetworkinsarcoma
AT zhaoziyue comprehensiveanalysisofginssubunitsprognosticvalueandcernanetworkinsarcoma
AT lihui comprehensiveanalysisofginssubunitsprognosticvalueandcernanetworkinsarcoma