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The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe
Documenting genome diversity is important for the local biomedical communities and instrumental in developing precision and personalized medicine. Currently, tens of thousands of whole-genome sequences from Europe are publicly available, but most of these represent populations of developed countries...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9463063/ https://www.ncbi.nlm.nih.gov/pubmed/36085557 http://dx.doi.org/10.1093/gigascience/giac081 |
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author | Oleksyk, Taras K Wolfsberger, Walter W Schubelka, Khrystyna Mangul, Serghei O'Brien, Stephen J |
author_facet | Oleksyk, Taras K Wolfsberger, Walter W Schubelka, Khrystyna Mangul, Serghei O'Brien, Stephen J |
author_sort | Oleksyk, Taras K |
collection | PubMed |
description | Documenting genome diversity is important for the local biomedical communities and instrumental in developing precision and personalized medicine. Currently, tens of thousands of whole-genome sequences from Europe are publicly available, but most of these represent populations of developed countries of Europe. The uneven distribution of the available data is further impaired by the lack of data sharing. Recent whole-genome studies in Eastern Europe, one in Ukraine and one in Russia, demonstrated that local genome diversity and population structure from Eastern Europe historically had not been fully represented. An unexpected wealth of genomic variation uncovered in these studies was not so much a consequence of high variation within their population, but rather due to the “pioneer advantage.” We discovered more variants because we were the first to prospect in the Eastern European genome pool. This simple comparison underscores the importance of removing the remaining geographic genome deserts from the rest of the world map of the human genome diversity. |
format | Online Article Text |
id | pubmed-9463063 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-94630632022-09-12 The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe Oleksyk, Taras K Wolfsberger, Walter W Schubelka, Khrystyna Mangul, Serghei O'Brien, Stephen J Gigascience Review Documenting genome diversity is important for the local biomedical communities and instrumental in developing precision and personalized medicine. Currently, tens of thousands of whole-genome sequences from Europe are publicly available, but most of these represent populations of developed countries of Europe. The uneven distribution of the available data is further impaired by the lack of data sharing. Recent whole-genome studies in Eastern Europe, one in Ukraine and one in Russia, demonstrated that local genome diversity and population structure from Eastern Europe historically had not been fully represented. An unexpected wealth of genomic variation uncovered in these studies was not so much a consequence of high variation within their population, but rather due to the “pioneer advantage.” We discovered more variants because we were the first to prospect in the Eastern European genome pool. This simple comparison underscores the importance of removing the remaining geographic genome deserts from the rest of the world map of the human genome diversity. Oxford University Press 2022-09-09 /pmc/articles/PMC9463063/ /pubmed/36085557 http://dx.doi.org/10.1093/gigascience/giac081 Text en © The Author(s) 2022. Published by Oxford University Press GigaScience. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Review Oleksyk, Taras K Wolfsberger, Walter W Schubelka, Khrystyna Mangul, Serghei O'Brien, Stephen J The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe |
title | The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe |
title_full | The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe |
title_fullStr | The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe |
title_full_unstemmed | The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe |
title_short | The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe |
title_sort | pioneer advantage: filling the blank spots on the map of genome diversity in europe |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9463063/ https://www.ncbi.nlm.nih.gov/pubmed/36085557 http://dx.doi.org/10.1093/gigascience/giac081 |
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