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The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe

Documenting genome diversity is important for the local biomedical communities and instrumental in developing precision and personalized medicine. Currently, tens of thousands of whole-genome sequences from Europe are publicly available, but most of these represent populations of developed countries...

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Autores principales: Oleksyk, Taras K, Wolfsberger, Walter W, Schubelka, Khrystyna, Mangul, Serghei, O'Brien, Stephen J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9463063/
https://www.ncbi.nlm.nih.gov/pubmed/36085557
http://dx.doi.org/10.1093/gigascience/giac081
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author Oleksyk, Taras K
Wolfsberger, Walter W
Schubelka, Khrystyna
Mangul, Serghei
O'Brien, Stephen J
author_facet Oleksyk, Taras K
Wolfsberger, Walter W
Schubelka, Khrystyna
Mangul, Serghei
O'Brien, Stephen J
author_sort Oleksyk, Taras K
collection PubMed
description Documenting genome diversity is important for the local biomedical communities and instrumental in developing precision and personalized medicine. Currently, tens of thousands of whole-genome sequences from Europe are publicly available, but most of these represent populations of developed countries of Europe. The uneven distribution of the available data is further impaired by the lack of data sharing. Recent whole-genome studies in Eastern Europe, one in Ukraine and one in Russia, demonstrated that local genome diversity and population structure from Eastern Europe historically had not been fully represented. An unexpected wealth of genomic variation uncovered in these studies was not so much a consequence of high variation within their population, but rather due to the “pioneer advantage.” We discovered more variants because we were the first to prospect in the Eastern European genome pool. This simple comparison underscores the importance of removing the remaining geographic genome deserts from the rest of the world map of the human genome diversity.
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spelling pubmed-94630632022-09-12 The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe Oleksyk, Taras K Wolfsberger, Walter W Schubelka, Khrystyna Mangul, Serghei O'Brien, Stephen J Gigascience Review Documenting genome diversity is important for the local biomedical communities and instrumental in developing precision and personalized medicine. Currently, tens of thousands of whole-genome sequences from Europe are publicly available, but most of these represent populations of developed countries of Europe. The uneven distribution of the available data is further impaired by the lack of data sharing. Recent whole-genome studies in Eastern Europe, one in Ukraine and one in Russia, demonstrated that local genome diversity and population structure from Eastern Europe historically had not been fully represented. An unexpected wealth of genomic variation uncovered in these studies was not so much a consequence of high variation within their population, but rather due to the “pioneer advantage.” We discovered more variants because we were the first to prospect in the Eastern European genome pool. This simple comparison underscores the importance of removing the remaining geographic genome deserts from the rest of the world map of the human genome diversity. Oxford University Press 2022-09-09 /pmc/articles/PMC9463063/ /pubmed/36085557 http://dx.doi.org/10.1093/gigascience/giac081 Text en © The Author(s) 2022. Published by Oxford University Press GigaScience. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review
Oleksyk, Taras K
Wolfsberger, Walter W
Schubelka, Khrystyna
Mangul, Serghei
O'Brien, Stephen J
The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe
title The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe
title_full The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe
title_fullStr The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe
title_full_unstemmed The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe
title_short The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe
title_sort pioneer advantage: filling the blank spots on the map of genome diversity in europe
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9463063/
https://www.ncbi.nlm.nih.gov/pubmed/36085557
http://dx.doi.org/10.1093/gigascience/giac081
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