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Hierarchical Individual Naturalistic Functional Brain Networks with Group Consistency Uncovered by a Two-Stage NAS-Volumetric Sparse DBN Framework

The functional magnetic resonance imaging under naturalistic paradigm (NfMRI) showed great advantages in identifying complex and interactive functional brain networks (FBNs) because of its dynamics and multimodal information. In recent years, various deep learning models, such as deep convolutional...

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Detalles Bibliográficos
Autores principales: Xu, Shuhan, Ren, Yudan, Tao, Zeyang, Song, Limei, He, Xiaowei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society for Neuroscience 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9463984/
https://www.ncbi.nlm.nih.gov/pubmed/35995557
http://dx.doi.org/10.1523/ENEURO.0200-22.2022
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author Xu, Shuhan
Ren, Yudan
Tao, Zeyang
Song, Limei
He, Xiaowei
author_facet Xu, Shuhan
Ren, Yudan
Tao, Zeyang
Song, Limei
He, Xiaowei
author_sort Xu, Shuhan
collection PubMed
description The functional magnetic resonance imaging under naturalistic paradigm (NfMRI) showed great advantages in identifying complex and interactive functional brain networks (FBNs) because of its dynamics and multimodal information. In recent years, various deep learning models, such as deep convolutional autoencoder (DCAE), deep belief network (DBN), and volumetric sparse DBN (vsDBN), can obtain hierarchical FBNs and temporal features from fMRI data. Among them, the vsDBN model revealed a good capability in identifying hierarchical FBNs by modeling fMRI volume images. However, because of the high dimensionality of fMRI volumes and the diverse training parameters of deep learning methods, especially the network architecture that is the most critical parameter for uncovering the hierarchical organization of human brain function, researchers still face challenges in designing an appropriate deep learning framework with automatic network architecture optimization to model volumetric NfMRI. In addition, most of the existing deep learning models ignore the group-wise consistency and intersubject variation properties embedded in NfMRI volumes. To solve these problems, we proposed a two-stage neural architecture search (NAS) and vsDBN model (two-stage NAS-vsDBN model) to identify the hierarchical human brain spatiotemporal features possessing both group consistency and individual uniqueness under naturalistic condition. Moreover, our model defined reliable network structure for modeling volumetric NfMRI data via NAS framework, and the group-level and individual-level FBNs and associated temporal features exhibited great consistency. In general, our method well identified the hierarchical temporal and spatial features of the brain function and revealed the crucial properties of neural processes under natural viewing condition.
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spelling pubmed-94639842022-09-12 Hierarchical Individual Naturalistic Functional Brain Networks with Group Consistency Uncovered by a Two-Stage NAS-Volumetric Sparse DBN Framework Xu, Shuhan Ren, Yudan Tao, Zeyang Song, Limei He, Xiaowei eNeuro Research Article: Methods/New Tools The functional magnetic resonance imaging under naturalistic paradigm (NfMRI) showed great advantages in identifying complex and interactive functional brain networks (FBNs) because of its dynamics and multimodal information. In recent years, various deep learning models, such as deep convolutional autoencoder (DCAE), deep belief network (DBN), and volumetric sparse DBN (vsDBN), can obtain hierarchical FBNs and temporal features from fMRI data. Among them, the vsDBN model revealed a good capability in identifying hierarchical FBNs by modeling fMRI volume images. However, because of the high dimensionality of fMRI volumes and the diverse training parameters of deep learning methods, especially the network architecture that is the most critical parameter for uncovering the hierarchical organization of human brain function, researchers still face challenges in designing an appropriate deep learning framework with automatic network architecture optimization to model volumetric NfMRI. In addition, most of the existing deep learning models ignore the group-wise consistency and intersubject variation properties embedded in NfMRI volumes. To solve these problems, we proposed a two-stage neural architecture search (NAS) and vsDBN model (two-stage NAS-vsDBN model) to identify the hierarchical human brain spatiotemporal features possessing both group consistency and individual uniqueness under naturalistic condition. Moreover, our model defined reliable network structure for modeling volumetric NfMRI data via NAS framework, and the group-level and individual-level FBNs and associated temporal features exhibited great consistency. In general, our method well identified the hierarchical temporal and spatial features of the brain function and revealed the crucial properties of neural processes under natural viewing condition. Society for Neuroscience 2022-09-07 /pmc/articles/PMC9463984/ /pubmed/35995557 http://dx.doi.org/10.1523/ENEURO.0200-22.2022 Text en Copyright © 2022 Xu et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.
spellingShingle Research Article: Methods/New Tools
Xu, Shuhan
Ren, Yudan
Tao, Zeyang
Song, Limei
He, Xiaowei
Hierarchical Individual Naturalistic Functional Brain Networks with Group Consistency Uncovered by a Two-Stage NAS-Volumetric Sparse DBN Framework
title Hierarchical Individual Naturalistic Functional Brain Networks with Group Consistency Uncovered by a Two-Stage NAS-Volumetric Sparse DBN Framework
title_full Hierarchical Individual Naturalistic Functional Brain Networks with Group Consistency Uncovered by a Two-Stage NAS-Volumetric Sparse DBN Framework
title_fullStr Hierarchical Individual Naturalistic Functional Brain Networks with Group Consistency Uncovered by a Two-Stage NAS-Volumetric Sparse DBN Framework
title_full_unstemmed Hierarchical Individual Naturalistic Functional Brain Networks with Group Consistency Uncovered by a Two-Stage NAS-Volumetric Sparse DBN Framework
title_short Hierarchical Individual Naturalistic Functional Brain Networks with Group Consistency Uncovered by a Two-Stage NAS-Volumetric Sparse DBN Framework
title_sort hierarchical individual naturalistic functional brain networks with group consistency uncovered by a two-stage nas-volumetric sparse dbn framework
topic Research Article: Methods/New Tools
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9463984/
https://www.ncbi.nlm.nih.gov/pubmed/35995557
http://dx.doi.org/10.1523/ENEURO.0200-22.2022
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