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Lessons learned: A neuroimaging research center's transition to open and reproducible science

Human functional neuroimaging has evolved dramatically in recent years, driven by increased technical complexity and emerging evidence that functional neuroimaging findings are not generally reproducible. In response to these trends, neuroimaging scientists have developed principles, practices, and...

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Autores principales: Bush, Keith A., Calvert, Maegan L., Kilts, Clinton D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9464934/
https://www.ncbi.nlm.nih.gov/pubmed/36105538
http://dx.doi.org/10.3389/fdata.2022.988084
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author Bush, Keith A.
Calvert, Maegan L.
Kilts, Clinton D.
author_facet Bush, Keith A.
Calvert, Maegan L.
Kilts, Clinton D.
author_sort Bush, Keith A.
collection PubMed
description Human functional neuroimaging has evolved dramatically in recent years, driven by increased technical complexity and emerging evidence that functional neuroimaging findings are not generally reproducible. In response to these trends, neuroimaging scientists have developed principles, practices, and tools to both manage this complexity as well as to enhance the rigor and reproducibility of neuroimaging science. We group these best practices under four categories: experiment pre-registration, FAIR data principles, reproducible neuroimaging analyses, and open science. While there is growing recognition of the need to implement these best practices there exists little practical guidance of how to accomplish this goal. In this work, we describe lessons learned from efforts to adopt these best practices within the Brain Imaging Research Center at the University of Arkansas for Medical Sciences over 4 years (July 2018–May 2022). We provide a brief summary of the four categories of best practices. We then describe our center's scientific workflow (from hypothesis formulation to result reporting) and detail how each element of this workflow maps onto these four categories. We also provide specific examples of practices or tools that support this mapping process. Finally, we offer a roadmap for the stepwise adoption of these practices, providing recommendations of why and what to do as well as a summary of cost-benefit tradeoffs for each step of the transition.
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spelling pubmed-94649342022-09-13 Lessons learned: A neuroimaging research center's transition to open and reproducible science Bush, Keith A. Calvert, Maegan L. Kilts, Clinton D. Front Big Data Big Data Human functional neuroimaging has evolved dramatically in recent years, driven by increased technical complexity and emerging evidence that functional neuroimaging findings are not generally reproducible. In response to these trends, neuroimaging scientists have developed principles, practices, and tools to both manage this complexity as well as to enhance the rigor and reproducibility of neuroimaging science. We group these best practices under four categories: experiment pre-registration, FAIR data principles, reproducible neuroimaging analyses, and open science. While there is growing recognition of the need to implement these best practices there exists little practical guidance of how to accomplish this goal. In this work, we describe lessons learned from efforts to adopt these best practices within the Brain Imaging Research Center at the University of Arkansas for Medical Sciences over 4 years (July 2018–May 2022). We provide a brief summary of the four categories of best practices. We then describe our center's scientific workflow (from hypothesis formulation to result reporting) and detail how each element of this workflow maps onto these four categories. We also provide specific examples of practices or tools that support this mapping process. Finally, we offer a roadmap for the stepwise adoption of these practices, providing recommendations of why and what to do as well as a summary of cost-benefit tradeoffs for each step of the transition. Frontiers Media S.A. 2022-08-29 /pmc/articles/PMC9464934/ /pubmed/36105538 http://dx.doi.org/10.3389/fdata.2022.988084 Text en Copyright © 2022 Bush, Calvert and Kilts. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Big Data
Bush, Keith A.
Calvert, Maegan L.
Kilts, Clinton D.
Lessons learned: A neuroimaging research center's transition to open and reproducible science
title Lessons learned: A neuroimaging research center's transition to open and reproducible science
title_full Lessons learned: A neuroimaging research center's transition to open and reproducible science
title_fullStr Lessons learned: A neuroimaging research center's transition to open and reproducible science
title_full_unstemmed Lessons learned: A neuroimaging research center's transition to open and reproducible science
title_short Lessons learned: A neuroimaging research center's transition to open and reproducible science
title_sort lessons learned: a neuroimaging research center's transition to open and reproducible science
topic Big Data
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9464934/
https://www.ncbi.nlm.nih.gov/pubmed/36105538
http://dx.doi.org/10.3389/fdata.2022.988084
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