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miR-22-3p as a potential biomarker for coronary artery disease based on integrated bioinformatics analysis
Background: Coronary artery disease (CAD) is a common cardiovascular disease that has attracted attention worldwide due to its high morbidity and mortality. Recent studies have shown that abnormal microRNA (miRNA) expression is effective in CAD diagnoses and processes. However, the potential relatio...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9464939/ https://www.ncbi.nlm.nih.gov/pubmed/36105099 http://dx.doi.org/10.3389/fgene.2022.936937 |
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author | Zhang, Minghua Hu, Yan Li, Haoda Guo, Xiaozi Zhong, Junhui He, Sha |
author_facet | Zhang, Minghua Hu, Yan Li, Haoda Guo, Xiaozi Zhong, Junhui He, Sha |
author_sort | Zhang, Minghua |
collection | PubMed |
description | Background: Coronary artery disease (CAD) is a common cardiovascular disease that has attracted attention worldwide due to its high morbidity and mortality. Recent studies have shown that abnormal microRNA (miRNA) expression is effective in CAD diagnoses and processes. However, the potential relationship between miRNAs and CAD remains unclear. Methods: Microarray datasets GSE105449 and GSE28858 were downloaded directly from the Gene Expression Omnibus (GEO) to identify miRNAs involved in CAD. Target gene prediction and enrichment analyses were performed using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). Results: There were nine differentially expressed miRNAs in CAD patients compared to the controls. A total of 352 genes were predicted and subjected to GO analysis, which showed that differentially expressed genes (DEGs) were mainly associated with axon guidance, neuron projection guidance, neuron-to-neuron synapses, and postsynaptic density. According to the KEGG pathway analysis, the most enriched pathways were those involved in transcriptional misregulation in cancer, growth hormone synthesis, secretion and action, endocrine resistance, axon guidance, and Cushing syndrome. Pathway analysis was mainly involved in the HIPPO and prion disease signaling pathways. Furthermore, a competing endogenous RNA (ceRNA) interaction network centered on miR-22-3p revealed eight related transcription factors in the cardiovascular system. The receiver operating characteristic (ROC) curve analysis suggested that miR-22-3p may be a better CAD predictor. Conclusion: The results indicate that miR-22-3p may function in pathophysiological CAD processes. Our study potentiates miR-22-3p as a specific biomarker for diagnosing CAD. |
format | Online Article Text |
id | pubmed-9464939 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94649392022-09-13 miR-22-3p as a potential biomarker for coronary artery disease based on integrated bioinformatics analysis Zhang, Minghua Hu, Yan Li, Haoda Guo, Xiaozi Zhong, Junhui He, Sha Front Genet Genetics Background: Coronary artery disease (CAD) is a common cardiovascular disease that has attracted attention worldwide due to its high morbidity and mortality. Recent studies have shown that abnormal microRNA (miRNA) expression is effective in CAD diagnoses and processes. However, the potential relationship between miRNAs and CAD remains unclear. Methods: Microarray datasets GSE105449 and GSE28858 were downloaded directly from the Gene Expression Omnibus (GEO) to identify miRNAs involved in CAD. Target gene prediction and enrichment analyses were performed using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). Results: There were nine differentially expressed miRNAs in CAD patients compared to the controls. A total of 352 genes were predicted and subjected to GO analysis, which showed that differentially expressed genes (DEGs) were mainly associated with axon guidance, neuron projection guidance, neuron-to-neuron synapses, and postsynaptic density. According to the KEGG pathway analysis, the most enriched pathways were those involved in transcriptional misregulation in cancer, growth hormone synthesis, secretion and action, endocrine resistance, axon guidance, and Cushing syndrome. Pathway analysis was mainly involved in the HIPPO and prion disease signaling pathways. Furthermore, a competing endogenous RNA (ceRNA) interaction network centered on miR-22-3p revealed eight related transcription factors in the cardiovascular system. The receiver operating characteristic (ROC) curve analysis suggested that miR-22-3p may be a better CAD predictor. Conclusion: The results indicate that miR-22-3p may function in pathophysiological CAD processes. Our study potentiates miR-22-3p as a specific biomarker for diagnosing CAD. Frontiers Media S.A. 2022-08-29 /pmc/articles/PMC9464939/ /pubmed/36105099 http://dx.doi.org/10.3389/fgene.2022.936937 Text en Copyright © 2022 Zhang, Hu, Li, Guo, Zhong and He. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Zhang, Minghua Hu, Yan Li, Haoda Guo, Xiaozi Zhong, Junhui He, Sha miR-22-3p as a potential biomarker for coronary artery disease based on integrated bioinformatics analysis |
title | miR-22-3p as a potential biomarker for coronary artery disease based on integrated bioinformatics analysis |
title_full | miR-22-3p as a potential biomarker for coronary artery disease based on integrated bioinformatics analysis |
title_fullStr | miR-22-3p as a potential biomarker for coronary artery disease based on integrated bioinformatics analysis |
title_full_unstemmed | miR-22-3p as a potential biomarker for coronary artery disease based on integrated bioinformatics analysis |
title_short | miR-22-3p as a potential biomarker for coronary artery disease based on integrated bioinformatics analysis |
title_sort | mir-22-3p as a potential biomarker for coronary artery disease based on integrated bioinformatics analysis |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9464939/ https://www.ncbi.nlm.nih.gov/pubmed/36105099 http://dx.doi.org/10.3389/fgene.2022.936937 |
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