Cargando…

A novel necroptosis-related lncRNAs signature effectively predicts the prognosis for osteosarcoma and is associated with immunity

Background: Necroptosis is closely related to tumorigenesis and development. Accumulating evidence has revealed that long non-coding RNAs (lncRNAs) are also central players in osteosarcoma (OS). However, the role of necroptosis-related lncRNAs in OS remains unclear. In the present study, we aim to c...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Binfeng, Feng, Chengyao, Liu, Zhongyue, Tu, Chao, Li, Zhihong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9465333/
https://www.ncbi.nlm.nih.gov/pubmed/36105232
http://dx.doi.org/10.3389/fphar.2022.944158
_version_ 1784787773301981184
author Liu, Binfeng
Feng, Chengyao
Liu, Zhongyue
Tu, Chao
Li, Zhihong
author_facet Liu, Binfeng
Feng, Chengyao
Liu, Zhongyue
Tu, Chao
Li, Zhihong
author_sort Liu, Binfeng
collection PubMed
description Background: Necroptosis is closely related to tumorigenesis and development. Accumulating evidence has revealed that long non-coding RNAs (lncRNAs) are also central players in osteosarcoma (OS). However, the role of necroptosis-related lncRNAs in OS remains unclear. In the present study, we aim to craft a prognostic signature based on necroptosis-related lncRNAs to improve the OS prognosis prediction. Methods: The signature based on necroptosis-related lncRNAs was discovered using univariate Cox, least absolute shrinkage and selection operator (LASSO), and multivariate Cox regression analysis. The prognosis efficiency of the signature was then estimated by employing various bioinformatics methods. Subsequently, immunological analysis and Gene Set Enrichment Analysis (GSEA) were used to explore the association between necroptosis-related lncRNAs with clinical outcomes and immune status. More importantly, several necroptosis-related lncRNAs were validated with RT-qPCR. Results: Consequently, a novel prognosis signature was successfully constructed based on eight necroptosis-related lncRNAs. Meanwhile, the novel necroptosis-related lncRNAs model could distribute OS patients into two risk groups with a stable and accurate predictive ability. Additionally, the GSEA and immune analysis revealed that the necroptosis-related lncRNAs signature affects the development and prognosis of OS by regulating the immune status. The necroptosis-related lncRNA signature was closely correlated with multiple anticancer agent susceptibility. Moreover, the RT-qPCR results indicated several necroptosis-related lncRNAs were significantly differently expressed in osteosarcoma and osteoblast cell lines. Conclusion: In this summary, a novel prognostic signature integrating necroptosis-related lncRNAs was firstly constructed and could accurately predict the prognosis of OS. This study may increase the predicted value and guide the personalized chemotherapy treatment for OS.
format Online
Article
Text
id pubmed-9465333
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-94653332022-09-13 A novel necroptosis-related lncRNAs signature effectively predicts the prognosis for osteosarcoma and is associated with immunity Liu, Binfeng Feng, Chengyao Liu, Zhongyue Tu, Chao Li, Zhihong Front Pharmacol Pharmacology Background: Necroptosis is closely related to tumorigenesis and development. Accumulating evidence has revealed that long non-coding RNAs (lncRNAs) are also central players in osteosarcoma (OS). However, the role of necroptosis-related lncRNAs in OS remains unclear. In the present study, we aim to craft a prognostic signature based on necroptosis-related lncRNAs to improve the OS prognosis prediction. Methods: The signature based on necroptosis-related lncRNAs was discovered using univariate Cox, least absolute shrinkage and selection operator (LASSO), and multivariate Cox regression analysis. The prognosis efficiency of the signature was then estimated by employing various bioinformatics methods. Subsequently, immunological analysis and Gene Set Enrichment Analysis (GSEA) were used to explore the association between necroptosis-related lncRNAs with clinical outcomes and immune status. More importantly, several necroptosis-related lncRNAs were validated with RT-qPCR. Results: Consequently, a novel prognosis signature was successfully constructed based on eight necroptosis-related lncRNAs. Meanwhile, the novel necroptosis-related lncRNAs model could distribute OS patients into two risk groups with a stable and accurate predictive ability. Additionally, the GSEA and immune analysis revealed that the necroptosis-related lncRNAs signature affects the development and prognosis of OS by regulating the immune status. The necroptosis-related lncRNA signature was closely correlated with multiple anticancer agent susceptibility. Moreover, the RT-qPCR results indicated several necroptosis-related lncRNAs were significantly differently expressed in osteosarcoma and osteoblast cell lines. Conclusion: In this summary, a novel prognostic signature integrating necroptosis-related lncRNAs was firstly constructed and could accurately predict the prognosis of OS. This study may increase the predicted value and guide the personalized chemotherapy treatment for OS. Frontiers Media S.A. 2022-08-29 /pmc/articles/PMC9465333/ /pubmed/36105232 http://dx.doi.org/10.3389/fphar.2022.944158 Text en Copyright © 2022 Liu, Feng, Liu, Tu and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pharmacology
Liu, Binfeng
Feng, Chengyao
Liu, Zhongyue
Tu, Chao
Li, Zhihong
A novel necroptosis-related lncRNAs signature effectively predicts the prognosis for osteosarcoma and is associated with immunity
title A novel necroptosis-related lncRNAs signature effectively predicts the prognosis for osteosarcoma and is associated with immunity
title_full A novel necroptosis-related lncRNAs signature effectively predicts the prognosis for osteosarcoma and is associated with immunity
title_fullStr A novel necroptosis-related lncRNAs signature effectively predicts the prognosis for osteosarcoma and is associated with immunity
title_full_unstemmed A novel necroptosis-related lncRNAs signature effectively predicts the prognosis for osteosarcoma and is associated with immunity
title_short A novel necroptosis-related lncRNAs signature effectively predicts the prognosis for osteosarcoma and is associated with immunity
title_sort novel necroptosis-related lncrnas signature effectively predicts the prognosis for osteosarcoma and is associated with immunity
topic Pharmacology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9465333/
https://www.ncbi.nlm.nih.gov/pubmed/36105232
http://dx.doi.org/10.3389/fphar.2022.944158
work_keys_str_mv AT liubinfeng anovelnecroptosisrelatedlncrnassignatureeffectivelypredictstheprognosisforosteosarcomaandisassociatedwithimmunity
AT fengchengyao anovelnecroptosisrelatedlncrnassignatureeffectivelypredictstheprognosisforosteosarcomaandisassociatedwithimmunity
AT liuzhongyue anovelnecroptosisrelatedlncrnassignatureeffectivelypredictstheprognosisforosteosarcomaandisassociatedwithimmunity
AT tuchao anovelnecroptosisrelatedlncrnassignatureeffectivelypredictstheprognosisforosteosarcomaandisassociatedwithimmunity
AT lizhihong anovelnecroptosisrelatedlncrnassignatureeffectivelypredictstheprognosisforosteosarcomaandisassociatedwithimmunity
AT liubinfeng novelnecroptosisrelatedlncrnassignatureeffectivelypredictstheprognosisforosteosarcomaandisassociatedwithimmunity
AT fengchengyao novelnecroptosisrelatedlncrnassignatureeffectivelypredictstheprognosisforosteosarcomaandisassociatedwithimmunity
AT liuzhongyue novelnecroptosisrelatedlncrnassignatureeffectivelypredictstheprognosisforosteosarcomaandisassociatedwithimmunity
AT tuchao novelnecroptosisrelatedlncrnassignatureeffectivelypredictstheprognosisforosteosarcomaandisassociatedwithimmunity
AT lizhihong novelnecroptosisrelatedlncrnassignatureeffectivelypredictstheprognosisforosteosarcomaandisassociatedwithimmunity