Cargando…
The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia
Ficus sarmentosa is a common climbing fig tree in East Asia in Moraceae, and its particular geographical distributed pattern and on-going radiation evolution make it significant to explore evolutionary history and biogeography of Ficus. In this work, the first complete chloroplast genome of F. sarme...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9467579/ https://www.ncbi.nlm.nih.gov/pubmed/36106191 http://dx.doi.org/10.1080/23802359.2022.2115860 |
_version_ | 1784788222650351616 |
---|---|
author | Zhang, Zhen Zhang, De-Shun |
author_facet | Zhang, Zhen Zhang, De-Shun |
author_sort | Zhang, Zhen |
collection | PubMed |
description | Ficus sarmentosa is a common climbing fig tree in East Asia in Moraceae, and its particular geographical distributed pattern and on-going radiation evolution make it significant to explore evolutionary history and biogeography of Ficus. In this work, the first complete chloroplast genome of F. sarmentosa was reported using Illumina NovaSeq high-throughput sequencing data. Totally, the whole chloroplast genome of F. sarmentosa is 160,183 bp in length, which includes large single-copy region of 88,307 bp, small single-copy region of 20,080 bp, and two pairs of inverted repeat regions of 25,898 bp. In addition, GC content and microsatellite makers of the genome were explored. Lastly, phylogenetic analysis demonstrated the closest relationship between F. sarmentosa and F. pumila. |
format | Online Article Text |
id | pubmed-9467579 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-94675792022-09-13 The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia Zhang, Zhen Zhang, De-Shun Mitochondrial DNA B Resour Mitogenome Announcement Ficus sarmentosa is a common climbing fig tree in East Asia in Moraceae, and its particular geographical distributed pattern and on-going radiation evolution make it significant to explore evolutionary history and biogeography of Ficus. In this work, the first complete chloroplast genome of F. sarmentosa was reported using Illumina NovaSeq high-throughput sequencing data. Totally, the whole chloroplast genome of F. sarmentosa is 160,183 bp in length, which includes large single-copy region of 88,307 bp, small single-copy region of 20,080 bp, and two pairs of inverted repeat regions of 25,898 bp. In addition, GC content and microsatellite makers of the genome were explored. Lastly, phylogenetic analysis demonstrated the closest relationship between F. sarmentosa and F. pumila. Taylor & Francis 2022-09-05 /pmc/articles/PMC9467579/ /pubmed/36106191 http://dx.doi.org/10.1080/23802359.2022.2115860 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhang, Zhen Zhang, De-Shun The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia |
title | The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia |
title_full | The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia |
title_fullStr | The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia |
title_full_unstemmed | The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia |
title_short | The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia |
title_sort | complete chloroplast genome sequence of ficus sarmentosa (moraceae, rosales), a widely distributed fig tree in east asia |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9467579/ https://www.ncbi.nlm.nih.gov/pubmed/36106191 http://dx.doi.org/10.1080/23802359.2022.2115860 |
work_keys_str_mv | AT zhangzhen thecompletechloroplastgenomesequenceofficussarmentosamoraceaerosalesawidelydistributedfigtreeineastasia AT zhangdeshun thecompletechloroplastgenomesequenceofficussarmentosamoraceaerosalesawidelydistributedfigtreeineastasia AT zhangzhen completechloroplastgenomesequenceofficussarmentosamoraceaerosalesawidelydistributedfigtreeineastasia AT zhangdeshun completechloroplastgenomesequenceofficussarmentosamoraceaerosalesawidelydistributedfigtreeineastasia |