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The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia

Ficus sarmentosa is a common climbing fig tree in East Asia in Moraceae, and its particular geographical distributed pattern and on-going radiation evolution make it significant to explore evolutionary history and biogeography of Ficus. In this work, the first complete chloroplast genome of F. sarme...

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Autores principales: Zhang, Zhen, Zhang, De-Shun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9467579/
https://www.ncbi.nlm.nih.gov/pubmed/36106191
http://dx.doi.org/10.1080/23802359.2022.2115860
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author Zhang, Zhen
Zhang, De-Shun
author_facet Zhang, Zhen
Zhang, De-Shun
author_sort Zhang, Zhen
collection PubMed
description Ficus sarmentosa is a common climbing fig tree in East Asia in Moraceae, and its particular geographical distributed pattern and on-going radiation evolution make it significant to explore evolutionary history and biogeography of Ficus. In this work, the first complete chloroplast genome of F. sarmentosa was reported using Illumina NovaSeq high-throughput sequencing data. Totally, the whole chloroplast genome of F. sarmentosa is 160,183 bp in length, which includes large single-copy region of 88,307 bp, small single-copy region of 20,080 bp, and two pairs of inverted repeat regions of 25,898 bp. In addition, GC content and microsatellite makers of the genome were explored. Lastly, phylogenetic analysis demonstrated the closest relationship between F. sarmentosa and F. pumila.
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spelling pubmed-94675792022-09-13 The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia Zhang, Zhen Zhang, De-Shun Mitochondrial DNA B Resour Mitogenome Announcement Ficus sarmentosa is a common climbing fig tree in East Asia in Moraceae, and its particular geographical distributed pattern and on-going radiation evolution make it significant to explore evolutionary history and biogeography of Ficus. In this work, the first complete chloroplast genome of F. sarmentosa was reported using Illumina NovaSeq high-throughput sequencing data. Totally, the whole chloroplast genome of F. sarmentosa is 160,183 bp in length, which includes large single-copy region of 88,307 bp, small single-copy region of 20,080 bp, and two pairs of inverted repeat regions of 25,898 bp. In addition, GC content and microsatellite makers of the genome were explored. Lastly, phylogenetic analysis demonstrated the closest relationship between F. sarmentosa and F. pumila. Taylor & Francis 2022-09-05 /pmc/articles/PMC9467579/ /pubmed/36106191 http://dx.doi.org/10.1080/23802359.2022.2115860 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Zhen
Zhang, De-Shun
The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia
title The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia
title_full The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia
title_fullStr The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia
title_full_unstemmed The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia
title_short The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia
title_sort complete chloroplast genome sequence of ficus sarmentosa (moraceae, rosales), a widely distributed fig tree in east asia
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9467579/
https://www.ncbi.nlm.nih.gov/pubmed/36106191
http://dx.doi.org/10.1080/23802359.2022.2115860
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