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The complete chloroplast genome of Alniaria alnifolia (Siebold and Zucc.) Rushforth, 2018

Alniaria alnifolia (Siebold and Zucc.) Rushforth, 2018 (alternative name: Sorbus alnifolia) belongs to the genus Alniaria of the family Rosaceae and is widely distributed in northern China, Korea, and Japan. It is an essential resource used in the construction, pharmaceuticals, and food industries....

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Autores principales: Yu, Mei, Bu, Jian-wen, Han, Biao, Liu, Dan, Lu, Chang, Wang, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9467580/
https://www.ncbi.nlm.nih.gov/pubmed/36106187
http://dx.doi.org/10.1080/23802359.2022.2116957
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author Yu, Mei
Bu, Jian-wen
Han, Biao
Liu, Dan
Lu, Chang
Wang, Lei
author_facet Yu, Mei
Bu, Jian-wen
Han, Biao
Liu, Dan
Lu, Chang
Wang, Lei
author_sort Yu, Mei
collection PubMed
description Alniaria alnifolia (Siebold and Zucc.) Rushforth, 2018 (alternative name: Sorbus alnifolia) belongs to the genus Alniaria of the family Rosaceae and is widely distributed in northern China, Korea, and Japan. It is an essential resource used in the construction, pharmaceuticals, and food industries. It is also used to treat various diseases, such as fever, hyperglycemia, rash, asthma, bronchitis, constipation, leprosy, anemia, and other skin ailments. In this study, we sequenced a sample of A. alnifolia and determined its complete chloroplast genome. The chloroplast genome of A. alnifolia has a circular structure with a length of 159,855 bp, which includes a small single-copy region (19,409 bp), a large single-copy region (87,628 bp), and two inverted repeats (26,409 bp). The sequence had 130 genes, including 85 protein-coding genes, eight rRNA genes, and 37 tRNA genes, and the overall GC content was 36.6%. The genes trnK-UUU, rps16, trnG-UCC, atpF, rpoC1, trnL-UAA, trnV-UAC, petB, petD, rpl16, rpl2, ndhB, trnI-GAU, trnA-UGC, and ndhA contained one intron; genes clpP and ycf3 contained two introns. Phylogenetic results showed that A. alnifolia had the closest relationship with Sorbus folgneri (MK161058).
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spelling pubmed-94675802022-09-13 The complete chloroplast genome of Alniaria alnifolia (Siebold and Zucc.) Rushforth, 2018 Yu, Mei Bu, Jian-wen Han, Biao Liu, Dan Lu, Chang Wang, Lei Mitochondrial DNA B Resour Plastome Announcement Alniaria alnifolia (Siebold and Zucc.) Rushforth, 2018 (alternative name: Sorbus alnifolia) belongs to the genus Alniaria of the family Rosaceae and is widely distributed in northern China, Korea, and Japan. It is an essential resource used in the construction, pharmaceuticals, and food industries. It is also used to treat various diseases, such as fever, hyperglycemia, rash, asthma, bronchitis, constipation, leprosy, anemia, and other skin ailments. In this study, we sequenced a sample of A. alnifolia and determined its complete chloroplast genome. The chloroplast genome of A. alnifolia has a circular structure with a length of 159,855 bp, which includes a small single-copy region (19,409 bp), a large single-copy region (87,628 bp), and two inverted repeats (26,409 bp). The sequence had 130 genes, including 85 protein-coding genes, eight rRNA genes, and 37 tRNA genes, and the overall GC content was 36.6%. The genes trnK-UUU, rps16, trnG-UCC, atpF, rpoC1, trnL-UAA, trnV-UAC, petB, petD, rpl16, rpl2, ndhB, trnI-GAU, trnA-UGC, and ndhA contained one intron; genes clpP and ycf3 contained two introns. Phylogenetic results showed that A. alnifolia had the closest relationship with Sorbus folgneri (MK161058). Taylor & Francis 2022-09-07 /pmc/articles/PMC9467580/ /pubmed/36106187 http://dx.doi.org/10.1080/23802359.2022.2116957 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Yu, Mei
Bu, Jian-wen
Han, Biao
Liu, Dan
Lu, Chang
Wang, Lei
The complete chloroplast genome of Alniaria alnifolia (Siebold and Zucc.) Rushforth, 2018
title The complete chloroplast genome of Alniaria alnifolia (Siebold and Zucc.) Rushforth, 2018
title_full The complete chloroplast genome of Alniaria alnifolia (Siebold and Zucc.) Rushforth, 2018
title_fullStr The complete chloroplast genome of Alniaria alnifolia (Siebold and Zucc.) Rushforth, 2018
title_full_unstemmed The complete chloroplast genome of Alniaria alnifolia (Siebold and Zucc.) Rushforth, 2018
title_short The complete chloroplast genome of Alniaria alnifolia (Siebold and Zucc.) Rushforth, 2018
title_sort complete chloroplast genome of alniaria alnifolia (siebold and zucc.) rushforth, 2018
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9467580/
https://www.ncbi.nlm.nih.gov/pubmed/36106187
http://dx.doi.org/10.1080/23802359.2022.2116957
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