Cargando…

Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate

Two different types of desaturations are employed by iron- and 2-oxoglutarate-dependent (Fe/2OG) enzymes to construct vinyl isonitrile and isocyanoacrylate moieties found in isonitrile-containing natural products. A substrate-bound protein structure reveals a plausible strategy to affect desaturatio...

Descripción completa

Detalles Bibliográficos
Autores principales: Kim, Wantae, Chen, Tzu-Yu, Cha, Lide, Zhou, Grace, Xing, Kristi, Canty, Nicholas Koenig, Zhang, Yan, Chang, Wei-chen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9467999/
https://www.ncbi.nlm.nih.gov/pubmed/36097268
http://dx.doi.org/10.1038/s41467-022-32870-4
_version_ 1784788316947742720
author Kim, Wantae
Chen, Tzu-Yu
Cha, Lide
Zhou, Grace
Xing, Kristi
Canty, Nicholas Koenig
Zhang, Yan
Chang, Wei-chen
author_facet Kim, Wantae
Chen, Tzu-Yu
Cha, Lide
Zhou, Grace
Xing, Kristi
Canty, Nicholas Koenig
Zhang, Yan
Chang, Wei-chen
author_sort Kim, Wantae
collection PubMed
description Two different types of desaturations are employed by iron- and 2-oxoglutarate-dependent (Fe/2OG) enzymes to construct vinyl isonitrile and isocyanoacrylate moieties found in isonitrile-containing natural products. A substrate-bound protein structure reveals a plausible strategy to affect desaturation and hints at substrate promiscuity of these enzymes. Analogs are synthesized and used as mechanistic probes to validate structural observations. Instead of proceeding through hydroxylated intermediate as previously proposed, a plausible carbocation species is utilized to trigger C=C bond installation. These Fe/2OG enzymes can also accommodate analogs with opposite chirality and different functional groups including isonitrile-(D)-tyrosine, N-formyl tyrosine, and phloretic acid, while maintaining the reaction selectivity.
format Online
Article
Text
id pubmed-9467999
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-94679992022-09-14 Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate Kim, Wantae Chen, Tzu-Yu Cha, Lide Zhou, Grace Xing, Kristi Canty, Nicholas Koenig Zhang, Yan Chang, Wei-chen Nat Commun Article Two different types of desaturations are employed by iron- and 2-oxoglutarate-dependent (Fe/2OG) enzymes to construct vinyl isonitrile and isocyanoacrylate moieties found in isonitrile-containing natural products. A substrate-bound protein structure reveals a plausible strategy to affect desaturation and hints at substrate promiscuity of these enzymes. Analogs are synthesized and used as mechanistic probes to validate structural observations. Instead of proceeding through hydroxylated intermediate as previously proposed, a plausible carbocation species is utilized to trigger C=C bond installation. These Fe/2OG enzymes can also accommodate analogs with opposite chirality and different functional groups including isonitrile-(D)-tyrosine, N-formyl tyrosine, and phloretic acid, while maintaining the reaction selectivity. Nature Publishing Group UK 2022-09-12 /pmc/articles/PMC9467999/ /pubmed/36097268 http://dx.doi.org/10.1038/s41467-022-32870-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kim, Wantae
Chen, Tzu-Yu
Cha, Lide
Zhou, Grace
Xing, Kristi
Canty, Nicholas Koenig
Zhang, Yan
Chang, Wei-chen
Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate
title Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate
title_full Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate
title_fullStr Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate
title_full_unstemmed Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate
title_short Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate
title_sort elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9467999/
https://www.ncbi.nlm.nih.gov/pubmed/36097268
http://dx.doi.org/10.1038/s41467-022-32870-4
work_keys_str_mv AT kimwantae elucidationofdivergentdesaturationpathwaysintheformationofvinylisonitrileandisocyanoacrylate
AT chentzuyu elucidationofdivergentdesaturationpathwaysintheformationofvinylisonitrileandisocyanoacrylate
AT chalide elucidationofdivergentdesaturationpathwaysintheformationofvinylisonitrileandisocyanoacrylate
AT zhougrace elucidationofdivergentdesaturationpathwaysintheformationofvinylisonitrileandisocyanoacrylate
AT xingkristi elucidationofdivergentdesaturationpathwaysintheformationofvinylisonitrileandisocyanoacrylate
AT cantynicholaskoenig elucidationofdivergentdesaturationpathwaysintheformationofvinylisonitrileandisocyanoacrylate
AT zhangyan elucidationofdivergentdesaturationpathwaysintheformationofvinylisonitrileandisocyanoacrylate
AT changweichen elucidationofdivergentdesaturationpathwaysintheformationofvinylisonitrileandisocyanoacrylate