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Research Note: Transcriptomic analysis of LMH cells in response to the overexpression of a hypothetical protein identified in Eimeria tenella SD-01 strain

Though genome sequencing of Eimeria tenella predicts more than 8,000 genes, the molecular functions of many proteins remain unknown. In this study, the coding region corresponding to the mature peptide of a hypothetical protein of E. tenella (ETH_00023950) was amplified and expressed in a bacterial...

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Autores principales: Mu, Bing-Jin, Meng, Yi-Jing, Liu, Xiao-Xin, Yu, Lin-Mei, Zheng, Wen-Bin, Xie, Shi-Chen, Zhu, Xing-Quan, Liu, Qing, Gao, Wen-Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9468589/
https://www.ncbi.nlm.nih.gov/pubmed/36067577
http://dx.doi.org/10.1016/j.psj.2022.102109
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author Mu, Bing-Jin
Meng, Yi-Jing
Liu, Xiao-Xin
Yu, Lin-Mei
Zheng, Wen-Bin
Xie, Shi-Chen
Zhu, Xing-Quan
Liu, Qing
Gao, Wen-Wei
author_facet Mu, Bing-Jin
Meng, Yi-Jing
Liu, Xiao-Xin
Yu, Lin-Mei
Zheng, Wen-Bin
Xie, Shi-Chen
Zhu, Xing-Quan
Liu, Qing
Gao, Wen-Wei
author_sort Mu, Bing-Jin
collection PubMed
description Though genome sequencing of Eimeria tenella predicts more than 8,000 genes, the molecular functions of many proteins remain unknown. In this study, the coding region corresponding to the mature peptide of a hypothetical protein of E. tenella (ETH_00023950) was amplified and expressed in a bacterial system. Following preparation of polyclonal antibody that recognizes ETH_00023950, the expression of ETH_00023950 in merozoites was examined. Meanwhile, we determined the transcriptomic responses of the leghorn male hepatoma (LMH) cells to its expression. Sequencing analysis showed that one single nucleotide polymorphism and one indel of ETH_00023950 of E. tenella SD-01 strain were found compared with that of the UK reference Houghton strain, leading to a frame shift and a premature stop codon. The expression of ETH_00023950 in E. tenella merozoites was confirmed by indirect immunofluorescence and Western blot analysis. Transcriptomic analysis showed that ETH_00023950 altered the expression of 2,680 genes (321 downregulated genes and 2,359 upregulated genes) in LMH cells. The RNA-sequencing data were consistent with the results of the quantitative real-time polymerase chain reaction (qRT-PCR). Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed that differentially expressed transcripts were significantly related to 8 pathways, including oxidative phosphorylation and TGF-beta signaling pathway. These findings contribute to understanding host-pathogen interaction and secondary bacterial infections related to E. tenella.
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spelling pubmed-94685892022-09-14 Research Note: Transcriptomic analysis of LMH cells in response to the overexpression of a hypothetical protein identified in Eimeria tenella SD-01 strain Mu, Bing-Jin Meng, Yi-Jing Liu, Xiao-Xin Yu, Lin-Mei Zheng, Wen-Bin Xie, Shi-Chen Zhu, Xing-Quan Liu, Qing Gao, Wen-Wei Poult Sci IMMUNOLOGY, HEALTH AND DISEASE Though genome sequencing of Eimeria tenella predicts more than 8,000 genes, the molecular functions of many proteins remain unknown. In this study, the coding region corresponding to the mature peptide of a hypothetical protein of E. tenella (ETH_00023950) was amplified and expressed in a bacterial system. Following preparation of polyclonal antibody that recognizes ETH_00023950, the expression of ETH_00023950 in merozoites was examined. Meanwhile, we determined the transcriptomic responses of the leghorn male hepatoma (LMH) cells to its expression. Sequencing analysis showed that one single nucleotide polymorphism and one indel of ETH_00023950 of E. tenella SD-01 strain were found compared with that of the UK reference Houghton strain, leading to a frame shift and a premature stop codon. The expression of ETH_00023950 in E. tenella merozoites was confirmed by indirect immunofluorescence and Western blot analysis. Transcriptomic analysis showed that ETH_00023950 altered the expression of 2,680 genes (321 downregulated genes and 2,359 upregulated genes) in LMH cells. The RNA-sequencing data were consistent with the results of the quantitative real-time polymerase chain reaction (qRT-PCR). Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed that differentially expressed transcripts were significantly related to 8 pathways, including oxidative phosphorylation and TGF-beta signaling pathway. These findings contribute to understanding host-pathogen interaction and secondary bacterial infections related to E. tenella. Elsevier 2022-08-04 /pmc/articles/PMC9468589/ /pubmed/36067577 http://dx.doi.org/10.1016/j.psj.2022.102109 Text en © 2022 Published by Elsevier Inc. on behalf of Poultry Science Association Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle IMMUNOLOGY, HEALTH AND DISEASE
Mu, Bing-Jin
Meng, Yi-Jing
Liu, Xiao-Xin
Yu, Lin-Mei
Zheng, Wen-Bin
Xie, Shi-Chen
Zhu, Xing-Quan
Liu, Qing
Gao, Wen-Wei
Research Note: Transcriptomic analysis of LMH cells in response to the overexpression of a hypothetical protein identified in Eimeria tenella SD-01 strain
title Research Note: Transcriptomic analysis of LMH cells in response to the overexpression of a hypothetical protein identified in Eimeria tenella SD-01 strain
title_full Research Note: Transcriptomic analysis of LMH cells in response to the overexpression of a hypothetical protein identified in Eimeria tenella SD-01 strain
title_fullStr Research Note: Transcriptomic analysis of LMH cells in response to the overexpression of a hypothetical protein identified in Eimeria tenella SD-01 strain
title_full_unstemmed Research Note: Transcriptomic analysis of LMH cells in response to the overexpression of a hypothetical protein identified in Eimeria tenella SD-01 strain
title_short Research Note: Transcriptomic analysis of LMH cells in response to the overexpression of a hypothetical protein identified in Eimeria tenella SD-01 strain
title_sort research note: transcriptomic analysis of lmh cells in response to the overexpression of a hypothetical protein identified in eimeria tenella sd-01 strain
topic IMMUNOLOGY, HEALTH AND DISEASE
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9468589/
https://www.ncbi.nlm.nih.gov/pubmed/36067577
http://dx.doi.org/10.1016/j.psj.2022.102109
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