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Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri

Polyclad flatworms are widely thought to be one of the least derived of the flatworm classes and, as such, are well placed to investigate evolutionary and developmental features such as spiral cleavage and larval diversification lost in other platyhelminths. Prostheceraeus crozieri, (formerly Mariti...

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Detalles Bibliográficos
Autores principales: Leite, Daniel J, Piovani, Laura, Telford, Maximilian J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9469890/
https://www.ncbi.nlm.nih.gov/pubmed/36040059
http://dx.doi.org/10.1093/gbe/evac133
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author Leite, Daniel J
Piovani, Laura
Telford, Maximilian J
author_facet Leite, Daniel J
Piovani, Laura
Telford, Maximilian J
author_sort Leite, Daniel J
collection PubMed
description Polyclad flatworms are widely thought to be one of the least derived of the flatworm classes and, as such, are well placed to investigate evolutionary and developmental features such as spiral cleavage and larval diversification lost in other platyhelminths. Prostheceraeus crozieri, (formerly Maritigrella crozieri), is an emerging model polyclad flatworm that already has some useful transcriptome data but, to date, no sequenced genome. We have used high molecular weight DNA extraction and long-read PacBio sequencing to assemble the highly repetitive (67.9%) P. crozieri genome (2.07 Gb). We have annotated 43,325 genes, with 89.7% BUSCO completeness. Perhaps reflecting its large genome, introns were considerably larger than other free-living flatworms, but evidence of abundant transposable elements suggests genome expansion has been principally via transposable elements activity. This genome resource will be of great use for future developmental and phylogenomic research.
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spelling pubmed-94698902022-09-14 Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri Leite, Daniel J Piovani, Laura Telford, Maximilian J Genome Biol Evol Genome Report Polyclad flatworms are widely thought to be one of the least derived of the flatworm classes and, as such, are well placed to investigate evolutionary and developmental features such as spiral cleavage and larval diversification lost in other platyhelminths. Prostheceraeus crozieri, (formerly Maritigrella crozieri), is an emerging model polyclad flatworm that already has some useful transcriptome data but, to date, no sequenced genome. We have used high molecular weight DNA extraction and long-read PacBio sequencing to assemble the highly repetitive (67.9%) P. crozieri genome (2.07 Gb). We have annotated 43,325 genes, with 89.7% BUSCO completeness. Perhaps reflecting its large genome, introns were considerably larger than other free-living flatworms, but evidence of abundant transposable elements suggests genome expansion has been principally via transposable elements activity. This genome resource will be of great use for future developmental and phylogenomic research. Oxford University Press 2022-08-30 /pmc/articles/PMC9469890/ /pubmed/36040059 http://dx.doi.org/10.1093/gbe/evac133 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Report
Leite, Daniel J
Piovani, Laura
Telford, Maximilian J
Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri
title Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri
title_full Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri
title_fullStr Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri
title_full_unstemmed Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri
title_short Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri
title_sort genome assembly of the polyclad flatworm prostheceraeus crozieri
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9469890/
https://www.ncbi.nlm.nih.gov/pubmed/36040059
http://dx.doi.org/10.1093/gbe/evac133
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