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Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri
Polyclad flatworms are widely thought to be one of the least derived of the flatworm classes and, as such, are well placed to investigate evolutionary and developmental features such as spiral cleavage and larval diversification lost in other platyhelminths. Prostheceraeus crozieri, (formerly Mariti...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Oxford University Press
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9469890/ https://www.ncbi.nlm.nih.gov/pubmed/36040059 http://dx.doi.org/10.1093/gbe/evac133 |
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author | Leite, Daniel J Piovani, Laura Telford, Maximilian J |
author_facet | Leite, Daniel J Piovani, Laura Telford, Maximilian J |
author_sort | Leite, Daniel J |
collection | PubMed |
description | Polyclad flatworms are widely thought to be one of the least derived of the flatworm classes and, as such, are well placed to investigate evolutionary and developmental features such as spiral cleavage and larval diversification lost in other platyhelminths. Prostheceraeus crozieri, (formerly Maritigrella crozieri), is an emerging model polyclad flatworm that already has some useful transcriptome data but, to date, no sequenced genome. We have used high molecular weight DNA extraction and long-read PacBio sequencing to assemble the highly repetitive (67.9%) P. crozieri genome (2.07 Gb). We have annotated 43,325 genes, with 89.7% BUSCO completeness. Perhaps reflecting its large genome, introns were considerably larger than other free-living flatworms, but evidence of abundant transposable elements suggests genome expansion has been principally via transposable elements activity. This genome resource will be of great use for future developmental and phylogenomic research. |
format | Online Article Text |
id | pubmed-9469890 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-94698902022-09-14 Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri Leite, Daniel J Piovani, Laura Telford, Maximilian J Genome Biol Evol Genome Report Polyclad flatworms are widely thought to be one of the least derived of the flatworm classes and, as such, are well placed to investigate evolutionary and developmental features such as spiral cleavage and larval diversification lost in other platyhelminths. Prostheceraeus crozieri, (formerly Maritigrella crozieri), is an emerging model polyclad flatworm that already has some useful transcriptome data but, to date, no sequenced genome. We have used high molecular weight DNA extraction and long-read PacBio sequencing to assemble the highly repetitive (67.9%) P. crozieri genome (2.07 Gb). We have annotated 43,325 genes, with 89.7% BUSCO completeness. Perhaps reflecting its large genome, introns were considerably larger than other free-living flatworms, but evidence of abundant transposable elements suggests genome expansion has been principally via transposable elements activity. This genome resource will be of great use for future developmental and phylogenomic research. Oxford University Press 2022-08-30 /pmc/articles/PMC9469890/ /pubmed/36040059 http://dx.doi.org/10.1093/gbe/evac133 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Report Leite, Daniel J Piovani, Laura Telford, Maximilian J Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri |
title | Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri |
title_full | Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri |
title_fullStr | Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri |
title_full_unstemmed | Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri |
title_short | Genome Assembly of the Polyclad Flatworm Prostheceraeus crozieri |
title_sort | genome assembly of the polyclad flatworm prostheceraeus crozieri |
topic | Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9469890/ https://www.ncbi.nlm.nih.gov/pubmed/36040059 http://dx.doi.org/10.1093/gbe/evac133 |
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