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Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture
In Arabidopsis thaliana , the Sigma factor B regulator RsbQ‐like family of α/β hydrolases contains the strigolactone (SL) receptor DWARF14 (AtD14), the karrikin receptor KARRIKIN INSENSITIVE2 (AtKAI2), and DWARF14‐LIKE2 (AtDLK2), a protein of unknown function. Despite very similar protein folds, AtD...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9470386/ https://www.ncbi.nlm.nih.gov/pubmed/36172078 http://dx.doi.org/10.1002/pld3.446 |
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author | Bürger, Marco Honda, Kaori Kondoh, Yasumitsu Hong, Sharon Watanabe, Nobumoto Osada, Hiroyuki Chory, Joanne |
author_facet | Bürger, Marco Honda, Kaori Kondoh, Yasumitsu Hong, Sharon Watanabe, Nobumoto Osada, Hiroyuki Chory, Joanne |
author_sort | Bürger, Marco |
collection | PubMed |
description | In Arabidopsis thaliana , the Sigma factor B regulator RsbQ‐like family of α/β hydrolases contains the strigolactone (SL) receptor DWARF14 (AtD14), the karrikin receptor KARRIKIN INSENSITIVE2 (AtKAI2), and DWARF14‐LIKE2 (AtDLK2), a protein of unknown function. Despite very similar protein folds, AtD14 and AtKAI2 differ in size and architecture of their ligand binding pockets, influencing their substrate specificity. We present the 1.5 Å crystal structure of AtDLK2, revealing the smallest ligand binding pocket in the protein family, bordered by two unique glycine residues. We identified a gatekeeper residue in the protein's lid domain and present a pyrrolo‐quinoline‐dione compound that inhibits AtDLK2's enzymatic activity. |
format | Online Article Text |
id | pubmed-9470386 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94703862022-09-27 Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture Bürger, Marco Honda, Kaori Kondoh, Yasumitsu Hong, Sharon Watanabe, Nobumoto Osada, Hiroyuki Chory, Joanne Plant Direct Original Research In Arabidopsis thaliana , the Sigma factor B regulator RsbQ‐like family of α/β hydrolases contains the strigolactone (SL) receptor DWARF14 (AtD14), the karrikin receptor KARRIKIN INSENSITIVE2 (AtKAI2), and DWARF14‐LIKE2 (AtDLK2), a protein of unknown function. Despite very similar protein folds, AtD14 and AtKAI2 differ in size and architecture of their ligand binding pockets, influencing their substrate specificity. We present the 1.5 Å crystal structure of AtDLK2, revealing the smallest ligand binding pocket in the protein family, bordered by two unique glycine residues. We identified a gatekeeper residue in the protein's lid domain and present a pyrrolo‐quinoline‐dione compound that inhibits AtDLK2's enzymatic activity. John Wiley and Sons Inc. 2022-09-13 /pmc/articles/PMC9470386/ /pubmed/36172078 http://dx.doi.org/10.1002/pld3.446 Text en © 2022 Salk Institute for Biological Studies. Plant Direct published by American Society of Plant Biologists and the Society for Experimental Biology and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Original Research Bürger, Marco Honda, Kaori Kondoh, Yasumitsu Hong, Sharon Watanabe, Nobumoto Osada, Hiroyuki Chory, Joanne Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture |
title | Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture |
title_full | Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture |
title_fullStr | Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture |
title_full_unstemmed | Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture |
title_short | Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture |
title_sort | crystal structure of arabidopsis dwarf14‐like2 (dlk2) reveals a distinct substrate binding pocket architecture |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9470386/ https://www.ncbi.nlm.nih.gov/pubmed/36172078 http://dx.doi.org/10.1002/pld3.446 |
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