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Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture

In Arabidopsis thaliana , the Sigma factor B regulator RsbQ‐like family of α/β hydrolases contains the strigolactone (SL) receptor DWARF14 (AtD14), the karrikin receptor KARRIKIN INSENSITIVE2 (AtKAI2), and DWARF14‐LIKE2 (AtDLK2), a protein of unknown function. Despite very similar protein folds, AtD...

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Autores principales: Bürger, Marco, Honda, Kaori, Kondoh, Yasumitsu, Hong, Sharon, Watanabe, Nobumoto, Osada, Hiroyuki, Chory, Joanne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9470386/
https://www.ncbi.nlm.nih.gov/pubmed/36172078
http://dx.doi.org/10.1002/pld3.446
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author Bürger, Marco
Honda, Kaori
Kondoh, Yasumitsu
Hong, Sharon
Watanabe, Nobumoto
Osada, Hiroyuki
Chory, Joanne
author_facet Bürger, Marco
Honda, Kaori
Kondoh, Yasumitsu
Hong, Sharon
Watanabe, Nobumoto
Osada, Hiroyuki
Chory, Joanne
author_sort Bürger, Marco
collection PubMed
description In Arabidopsis thaliana , the Sigma factor B regulator RsbQ‐like family of α/β hydrolases contains the strigolactone (SL) receptor DWARF14 (AtD14), the karrikin receptor KARRIKIN INSENSITIVE2 (AtKAI2), and DWARF14‐LIKE2 (AtDLK2), a protein of unknown function. Despite very similar protein folds, AtD14 and AtKAI2 differ in size and architecture of their ligand binding pockets, influencing their substrate specificity. We present the 1.5 Å crystal structure of AtDLK2, revealing the smallest ligand binding pocket in the protein family, bordered by two unique glycine residues. We identified a gatekeeper residue in the protein's lid domain and present a pyrrolo‐quinoline‐dione compound that inhibits AtDLK2's enzymatic activity.
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spelling pubmed-94703862022-09-27 Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture Bürger, Marco Honda, Kaori Kondoh, Yasumitsu Hong, Sharon Watanabe, Nobumoto Osada, Hiroyuki Chory, Joanne Plant Direct Original Research In Arabidopsis thaliana , the Sigma factor B regulator RsbQ‐like family of α/β hydrolases contains the strigolactone (SL) receptor DWARF14 (AtD14), the karrikin receptor KARRIKIN INSENSITIVE2 (AtKAI2), and DWARF14‐LIKE2 (AtDLK2), a protein of unknown function. Despite very similar protein folds, AtD14 and AtKAI2 differ in size and architecture of their ligand binding pockets, influencing their substrate specificity. We present the 1.5 Å crystal structure of AtDLK2, revealing the smallest ligand binding pocket in the protein family, bordered by two unique glycine residues. We identified a gatekeeper residue in the protein's lid domain and present a pyrrolo‐quinoline‐dione compound that inhibits AtDLK2's enzymatic activity. John Wiley and Sons Inc. 2022-09-13 /pmc/articles/PMC9470386/ /pubmed/36172078 http://dx.doi.org/10.1002/pld3.446 Text en © 2022 Salk Institute for Biological Studies. Plant Direct published by American Society of Plant Biologists and the Society for Experimental Biology and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Research
Bürger, Marco
Honda, Kaori
Kondoh, Yasumitsu
Hong, Sharon
Watanabe, Nobumoto
Osada, Hiroyuki
Chory, Joanne
Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture
title Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture
title_full Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture
title_fullStr Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture
title_full_unstemmed Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture
title_short Crystal structure of Arabidopsis DWARF14‐LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture
title_sort crystal structure of arabidopsis dwarf14‐like2 (dlk2) reveals a distinct substrate binding pocket architecture
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9470386/
https://www.ncbi.nlm.nih.gov/pubmed/36172078
http://dx.doi.org/10.1002/pld3.446
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