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Draft genome assemblies of four manakins
Manakins are a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family has served as a good model for the study of sexual selection. Here we present genome assemblies of four manakin species, incl...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9470731/ https://www.ncbi.nlm.nih.gov/pubmed/36100590 http://dx.doi.org/10.1038/s41597-022-01680-0 |
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author | Li, Xuemei Gao, Rongsheng Chen, Guangji Price, Alivia Lee Øksnebjerg, Daniel Bilyeli Hosner, Peter Andrew Zhou, Yang Zhang, Guojie Feng, Shaohong |
author_facet | Li, Xuemei Gao, Rongsheng Chen, Guangji Price, Alivia Lee Øksnebjerg, Daniel Bilyeli Hosner, Peter Andrew Zhou, Yang Zhang, Guojie Feng, Shaohong |
author_sort | Li, Xuemei |
collection | PubMed |
description | Manakins are a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family has served as a good model for the study of sexual selection. Here we present genome assemblies of four manakin species, including Cryptopipo holochlora, Dixiphia pipra (also known as Pseudopipra pipra), Machaeropterus deliciosus and Masius chrysopterus, generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 29 Mb and contig N50 of 169 Kb. On average, 12,055 protein-coding genes were annotated in the genomes, and 9.79% of the genomes were annotated as repetitive elements. We further identified 75 Mb of Z-linked sequences in manakins, containing 585 to 751 genes and an ~600 Kb pseudoautosomal region (PAR). One notable finding from these Z-linked sequences is that a possible Z-to-autosome/PAR reversal could have occurred in M. chrysopterus. These de novo genomes will contribute to a deeper understanding of evolutionary history and sexual selection in manakins. |
format | Online Article Text |
id | pubmed-9470731 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-94707312022-09-15 Draft genome assemblies of four manakins Li, Xuemei Gao, Rongsheng Chen, Guangji Price, Alivia Lee Øksnebjerg, Daniel Bilyeli Hosner, Peter Andrew Zhou, Yang Zhang, Guojie Feng, Shaohong Sci Data Data Descriptor Manakins are a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family has served as a good model for the study of sexual selection. Here we present genome assemblies of four manakin species, including Cryptopipo holochlora, Dixiphia pipra (also known as Pseudopipra pipra), Machaeropterus deliciosus and Masius chrysopterus, generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 29 Mb and contig N50 of 169 Kb. On average, 12,055 protein-coding genes were annotated in the genomes, and 9.79% of the genomes were annotated as repetitive elements. We further identified 75 Mb of Z-linked sequences in manakins, containing 585 to 751 genes and an ~600 Kb pseudoautosomal region (PAR). One notable finding from these Z-linked sequences is that a possible Z-to-autosome/PAR reversal could have occurred in M. chrysopterus. These de novo genomes will contribute to a deeper understanding of evolutionary history and sexual selection in manakins. Nature Publishing Group UK 2022-09-13 /pmc/articles/PMC9470731/ /pubmed/36100590 http://dx.doi.org/10.1038/s41597-022-01680-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Li, Xuemei Gao, Rongsheng Chen, Guangji Price, Alivia Lee Øksnebjerg, Daniel Bilyeli Hosner, Peter Andrew Zhou, Yang Zhang, Guojie Feng, Shaohong Draft genome assemblies of four manakins |
title | Draft genome assemblies of four manakins |
title_full | Draft genome assemblies of four manakins |
title_fullStr | Draft genome assemblies of four manakins |
title_full_unstemmed | Draft genome assemblies of four manakins |
title_short | Draft genome assemblies of four manakins |
title_sort | draft genome assemblies of four manakins |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9470731/ https://www.ncbi.nlm.nih.gov/pubmed/36100590 http://dx.doi.org/10.1038/s41597-022-01680-0 |
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