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Application value of a deep learning method based on a 3D V-Net convolutional neural network in the recognition and segmentation of the auditory ossicles

OBJECTIVE: To explore the feasibility of a deep learning three-dimensional (3D) V-Net convolutional neural network to construct high-resolution computed tomography (HRCT)-based auditory ossicle structure recognition and segmentation models. METHODS: The temporal bone HRCT images of 158 patients were...

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Autores principales: Wang, Xing-Rui, Ma, Xi, Jin, Liu-Xu, Gao, Yan-Jun, Xue, Yong-Jie, Li, Jing-Long, Bai, Wei-Xian, Han, Miao-Fei, Zhou, Qing, Shi, Feng, Wang, Jing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9470864/
https://www.ncbi.nlm.nih.gov/pubmed/36120083
http://dx.doi.org/10.3389/fninf.2022.937891
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author Wang, Xing-Rui
Ma, Xi
Jin, Liu-Xu
Gao, Yan-Jun
Xue, Yong-Jie
Li, Jing-Long
Bai, Wei-Xian
Han, Miao-Fei
Zhou, Qing
Shi, Feng
Wang, Jing
author_facet Wang, Xing-Rui
Ma, Xi
Jin, Liu-Xu
Gao, Yan-Jun
Xue, Yong-Jie
Li, Jing-Long
Bai, Wei-Xian
Han, Miao-Fei
Zhou, Qing
Shi, Feng
Wang, Jing
author_sort Wang, Xing-Rui
collection PubMed
description OBJECTIVE: To explore the feasibility of a deep learning three-dimensional (3D) V-Net convolutional neural network to construct high-resolution computed tomography (HRCT)-based auditory ossicle structure recognition and segmentation models. METHODS: The temporal bone HRCT images of 158 patients were collected retrospectively, and the malleus, incus, and stapes were manually segmented. The 3D V-Net and U-Net convolutional neural networks were selected as the deep learning methods for segmenting the auditory ossicles. The temporal bone images were randomized into a training set (126 cases), a test set (16 cases), and a validation set (16 cases). Taking the results of manual segmentation as a control, the segmentation results of each model were compared. RESULTS: The Dice similarity coefficients (DSCs) of the malleus, incus, and stapes, which were automatically segmented with a 3D V-Net convolutional neural network and manually segmented from the HRCT images, were 0.920 ± 0.014, 0.925 ± 0.014, and 0.835 ± 0.035, respectively. The average surface distance (ASD) was 0.257 ± 0.054, 0.236 ± 0.047, and 0.258 ± 0.077, respectively. The Hausdorff distance (HD) 95 was 1.016 ± 0.080, 1.000 ± 0.000, and 1.027 ± 0.102, respectively. The DSCs of the malleus, incus, and stapes, which were automatically segmented using the 3D U-Net convolutional neural network and manually segmented from the HRCT images, were 0.876 ± 0.025, 0.889 ± 0.023, and 0.758 ± 0.044, respectively. The ASD was 0.439 ± 0.208, 0.361 ± 0.077, and 0.433 ± 0.108, respectively. The HD 95 was 1.361 ± 0.872, 1.174 ± 0.350, and 1.455 ± 0.618, respectively. As these results demonstrated, there was a statistically significant difference between the two groups (P < 0.001). CONCLUSION: The 3D V-Net convolutional neural network yielded automatic recognition and segmentation of the auditory ossicles and produced similar accuracy to manual segmentation results.
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spelling pubmed-94708642022-09-15 Application value of a deep learning method based on a 3D V-Net convolutional neural network in the recognition and segmentation of the auditory ossicles Wang, Xing-Rui Ma, Xi Jin, Liu-Xu Gao, Yan-Jun Xue, Yong-Jie Li, Jing-Long Bai, Wei-Xian Han, Miao-Fei Zhou, Qing Shi, Feng Wang, Jing Front Neuroinform Neuroscience OBJECTIVE: To explore the feasibility of a deep learning three-dimensional (3D) V-Net convolutional neural network to construct high-resolution computed tomography (HRCT)-based auditory ossicle structure recognition and segmentation models. METHODS: The temporal bone HRCT images of 158 patients were collected retrospectively, and the malleus, incus, and stapes were manually segmented. The 3D V-Net and U-Net convolutional neural networks were selected as the deep learning methods for segmenting the auditory ossicles. The temporal bone images were randomized into a training set (126 cases), a test set (16 cases), and a validation set (16 cases). Taking the results of manual segmentation as a control, the segmentation results of each model were compared. RESULTS: The Dice similarity coefficients (DSCs) of the malleus, incus, and stapes, which were automatically segmented with a 3D V-Net convolutional neural network and manually segmented from the HRCT images, were 0.920 ± 0.014, 0.925 ± 0.014, and 0.835 ± 0.035, respectively. The average surface distance (ASD) was 0.257 ± 0.054, 0.236 ± 0.047, and 0.258 ± 0.077, respectively. The Hausdorff distance (HD) 95 was 1.016 ± 0.080, 1.000 ± 0.000, and 1.027 ± 0.102, respectively. The DSCs of the malleus, incus, and stapes, which were automatically segmented using the 3D U-Net convolutional neural network and manually segmented from the HRCT images, were 0.876 ± 0.025, 0.889 ± 0.023, and 0.758 ± 0.044, respectively. The ASD was 0.439 ± 0.208, 0.361 ± 0.077, and 0.433 ± 0.108, respectively. The HD 95 was 1.361 ± 0.872, 1.174 ± 0.350, and 1.455 ± 0.618, respectively. As these results demonstrated, there was a statistically significant difference between the two groups (P < 0.001). CONCLUSION: The 3D V-Net convolutional neural network yielded automatic recognition and segmentation of the auditory ossicles and produced similar accuracy to manual segmentation results. Frontiers Media S.A. 2022-08-31 /pmc/articles/PMC9470864/ /pubmed/36120083 http://dx.doi.org/10.3389/fninf.2022.937891 Text en Copyright © 2022 Wang, Ma, Jin, Gao, Xue, Li, Bai, Han, Zhou, Shi and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Wang, Xing-Rui
Ma, Xi
Jin, Liu-Xu
Gao, Yan-Jun
Xue, Yong-Jie
Li, Jing-Long
Bai, Wei-Xian
Han, Miao-Fei
Zhou, Qing
Shi, Feng
Wang, Jing
Application value of a deep learning method based on a 3D V-Net convolutional neural network in the recognition and segmentation of the auditory ossicles
title Application value of a deep learning method based on a 3D V-Net convolutional neural network in the recognition and segmentation of the auditory ossicles
title_full Application value of a deep learning method based on a 3D V-Net convolutional neural network in the recognition and segmentation of the auditory ossicles
title_fullStr Application value of a deep learning method based on a 3D V-Net convolutional neural network in the recognition and segmentation of the auditory ossicles
title_full_unstemmed Application value of a deep learning method based on a 3D V-Net convolutional neural network in the recognition and segmentation of the auditory ossicles
title_short Application value of a deep learning method based on a 3D V-Net convolutional neural network in the recognition and segmentation of the auditory ossicles
title_sort application value of a deep learning method based on a 3d v-net convolutional neural network in the recognition and segmentation of the auditory ossicles
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9470864/
https://www.ncbi.nlm.nih.gov/pubmed/36120083
http://dx.doi.org/10.3389/fninf.2022.937891
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