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Identification and verification of the pyroptosis-related prognostic signature and its associated regulatory axis in bladder cancer
Background: Pyroptosis is an inflammatory form of cell death triggered by certain inflammasomes. Accumulating studies have shown the involvement of pyroptosis in the proliferation, invasion, and metastasis and prognosis of cancer. The prognostic value of pyroptosis-related genes (PRGs) and their ass...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9470881/ https://www.ncbi.nlm.nih.gov/pubmed/36120583 http://dx.doi.org/10.3389/fcell.2022.912008 |
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author | Tu, Yaofen Ding, Xiaodi Mao, Zujie |
author_facet | Tu, Yaofen Ding, Xiaodi Mao, Zujie |
author_sort | Tu, Yaofen |
collection | PubMed |
description | Background: Pyroptosis is an inflammatory form of cell death triggered by certain inflammasomes. Accumulating studies have shown the involvement of pyroptosis in the proliferation, invasion, and metastasis and prognosis of cancer. The prognostic value of pyroptosis-related genes (PRGs) and their association with immune infiltration in bladder cancer have not yet been elucidated. Methods: We performed a comprehensive analysis of the prognostic value and immune infiltrates of PRGs in bladder cancer using the TCGA dataset. qRT-PCR was also performed to verify our result. Results: Among 33 PRGs, 14 PRGs were upregulated or downregulated in bladder cancer tissue versus normal tissue. We also summarized copy number variations and somatic mutations of PRGs in bladder cancer. By using consensus clustering analysis of PRGs with prognostic significance, we divided the bladder cancer cohort into two subtypes significantly by different prognosis and immune infiltration. Using the LASSO Cox regression analysis, a prognostic signature including six PRGs was constructed for bladder cancer and the patients could be classified into a low- or high-risk group. Interestingly, this prognostic signature had a favorable performance for predicting the prognosis of bladder cancer patients. Moreover, further analysis demonstrated a significant difference in gender, tumor grade, clinical stage, TNM stage, immunoScore, and immune cell infiltration between the high- and low-risk groups in bladder cancer. We also identified an lncRNA SNHG14/miR-20a-5p/CASP8 regulatory axis in bladder cancer by constructing a ceRNA network. Conclusion: We identified a PRG-associated prognostic signature associated with the prognosis and immune infiltrates for bladder cancer and targeting pyroptosis may be an alternative approach for therapy. Further vivo and vitro experiments are necessary to verify these results. |
format | Online Article Text |
id | pubmed-9470881 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94708812022-09-15 Identification and verification of the pyroptosis-related prognostic signature and its associated regulatory axis in bladder cancer Tu, Yaofen Ding, Xiaodi Mao, Zujie Front Cell Dev Biol Cell and Developmental Biology Background: Pyroptosis is an inflammatory form of cell death triggered by certain inflammasomes. Accumulating studies have shown the involvement of pyroptosis in the proliferation, invasion, and metastasis and prognosis of cancer. The prognostic value of pyroptosis-related genes (PRGs) and their association with immune infiltration in bladder cancer have not yet been elucidated. Methods: We performed a comprehensive analysis of the prognostic value and immune infiltrates of PRGs in bladder cancer using the TCGA dataset. qRT-PCR was also performed to verify our result. Results: Among 33 PRGs, 14 PRGs were upregulated or downregulated in bladder cancer tissue versus normal tissue. We also summarized copy number variations and somatic mutations of PRGs in bladder cancer. By using consensus clustering analysis of PRGs with prognostic significance, we divided the bladder cancer cohort into two subtypes significantly by different prognosis and immune infiltration. Using the LASSO Cox regression analysis, a prognostic signature including six PRGs was constructed for bladder cancer and the patients could be classified into a low- or high-risk group. Interestingly, this prognostic signature had a favorable performance for predicting the prognosis of bladder cancer patients. Moreover, further analysis demonstrated a significant difference in gender, tumor grade, clinical stage, TNM stage, immunoScore, and immune cell infiltration between the high- and low-risk groups in bladder cancer. We also identified an lncRNA SNHG14/miR-20a-5p/CASP8 regulatory axis in bladder cancer by constructing a ceRNA network. Conclusion: We identified a PRG-associated prognostic signature associated with the prognosis and immune infiltrates for bladder cancer and targeting pyroptosis may be an alternative approach for therapy. Further vivo and vitro experiments are necessary to verify these results. Frontiers Media S.A. 2022-08-31 /pmc/articles/PMC9470881/ /pubmed/36120583 http://dx.doi.org/10.3389/fcell.2022.912008 Text en Copyright © 2022 Tu, Ding and Mao. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cell and Developmental Biology Tu, Yaofen Ding, Xiaodi Mao, Zujie Identification and verification of the pyroptosis-related prognostic signature and its associated regulatory axis in bladder cancer |
title | Identification and verification of the pyroptosis-related prognostic signature and its associated regulatory axis in bladder cancer |
title_full | Identification and verification of the pyroptosis-related prognostic signature and its associated regulatory axis in bladder cancer |
title_fullStr | Identification and verification of the pyroptosis-related prognostic signature and its associated regulatory axis in bladder cancer |
title_full_unstemmed | Identification and verification of the pyroptosis-related prognostic signature and its associated regulatory axis in bladder cancer |
title_short | Identification and verification of the pyroptosis-related prognostic signature and its associated regulatory axis in bladder cancer |
title_sort | identification and verification of the pyroptosis-related prognostic signature and its associated regulatory axis in bladder cancer |
topic | Cell and Developmental Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9470881/ https://www.ncbi.nlm.nih.gov/pubmed/36120583 http://dx.doi.org/10.3389/fcell.2022.912008 |
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