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Cuproptosis scoring model predicts overall survival and assists in immunotherapeutic decision making in pancreatic carcinoma
Background: Cuproptosis is a newly identified form of non-apoptotic cell death that is associated with the progression and treatment responses in pancreatic adenocarcinoma (PAAD). However, its impact on oncology and tumor microenvironment (TME) remains unclear. Methods: Hub genes were identified usi...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9472214/ https://www.ncbi.nlm.nih.gov/pubmed/36118866 http://dx.doi.org/10.3389/fgene.2022.938488 |
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author | Liu, Tijun Liu, Qing Wang, Yongju Yang, Rong Tian, Fang |
author_facet | Liu, Tijun Liu, Qing Wang, Yongju Yang, Rong Tian, Fang |
author_sort | Liu, Tijun |
collection | PubMed |
description | Background: Cuproptosis is a newly identified form of non-apoptotic cell death that is associated with the progression and treatment responses in pancreatic adenocarcinoma (PAAD). However, its impact on oncology and tumor microenvironment (TME) remains unclear. Methods: Hub genes were identified using least absolute shrinkage and selection operator (LASSO) Cox regression for 25 newly reported cuproptosis-related regulators and subjected to stepwise regression to obtain cuproptosis-related score (CuRS). Additionally, the clinical significance, functional status, role on TME, and genomic variation of CuRS were further examined systematically. Results: A CuRS model incorporating TRAF2, TRADD, USP21, FAS, MLKL, TNFRSF10B, MAPK8, TRAF5, and RIPK3 was developed. The stability and accuracy of this risk model as an independent prognostic factor for PAAD were confirmed in the training and external validation cohorts. Patients in the high-CuRS group had “cold” tumors with active tumor proliferation and immunosuppression, whereas those in the low-CuRS group comprised “hot” tumors with active immune function and cell killing capacity. Additionally, patients in the high-CuRS group carried fewer genomic copy number variations (CNVs) and greater somatic mutations. Furthermore, patients in the low- and high-CuRS groups exhibited increased sensitivity to immunotherapy and chemotherapy, respectively. Conclusion: We developed and validated a robust CuRS model based on cuproptosis to assess patients’ prognoses and guide clinical decision-making. Overall, the findings of this study are expected to contribute to the comprehensive understanding of cuproptosis and facilitate precise treatment of PAAD. |
format | Online Article Text |
id | pubmed-9472214 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94722142022-09-15 Cuproptosis scoring model predicts overall survival and assists in immunotherapeutic decision making in pancreatic carcinoma Liu, Tijun Liu, Qing Wang, Yongju Yang, Rong Tian, Fang Front Genet Genetics Background: Cuproptosis is a newly identified form of non-apoptotic cell death that is associated with the progression and treatment responses in pancreatic adenocarcinoma (PAAD). However, its impact on oncology and tumor microenvironment (TME) remains unclear. Methods: Hub genes were identified using least absolute shrinkage and selection operator (LASSO) Cox regression for 25 newly reported cuproptosis-related regulators and subjected to stepwise regression to obtain cuproptosis-related score (CuRS). Additionally, the clinical significance, functional status, role on TME, and genomic variation of CuRS were further examined systematically. Results: A CuRS model incorporating TRAF2, TRADD, USP21, FAS, MLKL, TNFRSF10B, MAPK8, TRAF5, and RIPK3 was developed. The stability and accuracy of this risk model as an independent prognostic factor for PAAD were confirmed in the training and external validation cohorts. Patients in the high-CuRS group had “cold” tumors with active tumor proliferation and immunosuppression, whereas those in the low-CuRS group comprised “hot” tumors with active immune function and cell killing capacity. Additionally, patients in the high-CuRS group carried fewer genomic copy number variations (CNVs) and greater somatic mutations. Furthermore, patients in the low- and high-CuRS groups exhibited increased sensitivity to immunotherapy and chemotherapy, respectively. Conclusion: We developed and validated a robust CuRS model based on cuproptosis to assess patients’ prognoses and guide clinical decision-making. Overall, the findings of this study are expected to contribute to the comprehensive understanding of cuproptosis and facilitate precise treatment of PAAD. Frontiers Media S.A. 2022-08-31 /pmc/articles/PMC9472214/ /pubmed/36118866 http://dx.doi.org/10.3389/fgene.2022.938488 Text en Copyright © 2022 Liu, Liu, Wang, Yang and Tian. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Liu, Tijun Liu, Qing Wang, Yongju Yang, Rong Tian, Fang Cuproptosis scoring model predicts overall survival and assists in immunotherapeutic decision making in pancreatic carcinoma |
title | Cuproptosis scoring model predicts overall survival and assists in immunotherapeutic decision making in pancreatic carcinoma |
title_full | Cuproptosis scoring model predicts overall survival and assists in immunotherapeutic decision making in pancreatic carcinoma |
title_fullStr | Cuproptosis scoring model predicts overall survival and assists in immunotherapeutic decision making in pancreatic carcinoma |
title_full_unstemmed | Cuproptosis scoring model predicts overall survival and assists in immunotherapeutic decision making in pancreatic carcinoma |
title_short | Cuproptosis scoring model predicts overall survival and assists in immunotherapeutic decision making in pancreatic carcinoma |
title_sort | cuproptosis scoring model predicts overall survival and assists in immunotherapeutic decision making in pancreatic carcinoma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9472214/ https://www.ncbi.nlm.nih.gov/pubmed/36118866 http://dx.doi.org/10.3389/fgene.2022.938488 |
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