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Exploring protein symmetry at the RCSB Protein Data Bank

The symmetry of biological molecules has fascinated structural biologists ever since the structure of hemoglobin was determined. The Protein Data Bank (PDB) archive is the central global archive of three-dimensional (3D), atomic-level structures of biomolecules, providing open access to the results...

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Detalles Bibliográficos
Autores principales: Duarte, Jose M., Dutta, Shuchismita, Goodsell, David S., Burley, Stephen K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9472815/
https://www.ncbi.nlm.nih.gov/pubmed/35801924
http://dx.doi.org/10.1042/ETLS20210267
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author Duarte, Jose M.
Dutta, Shuchismita
Goodsell, David S.
Burley, Stephen K.
author_facet Duarte, Jose M.
Dutta, Shuchismita
Goodsell, David S.
Burley, Stephen K.
author_sort Duarte, Jose M.
collection PubMed
description The symmetry of biological molecules has fascinated structural biologists ever since the structure of hemoglobin was determined. The Protein Data Bank (PDB) archive is the central global archive of three-dimensional (3D), atomic-level structures of biomolecules, providing open access to the results of structural biology research with no limitations on usage. Roughly 40% of the structures in the archive exhibit some type of symmetry, including formal global symmetry, local symmetry, or pseudosymmetry. The Research Collaboratory for Structural Bioinformatics (RCSB) Protein Data Bank (founding member of the Worldwide Protein Data Bank partnership that jointly manages, curates, and disseminates the archive) provides a variety of tools to assist users interested in exploring the symmetry of biological macromolecules. These tools include multiple modalities for searching and browsing the archive, turnkey methods for biomolecular visualization, documentation, and outreach materials for exploring functional biomolecular symmetry.
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spelling pubmed-94728152022-09-19 Exploring protein symmetry at the RCSB Protein Data Bank Duarte, Jose M. Dutta, Shuchismita Goodsell, David S. Burley, Stephen K. Emerg Top Life Sci Review Articles The symmetry of biological molecules has fascinated structural biologists ever since the structure of hemoglobin was determined. The Protein Data Bank (PDB) archive is the central global archive of three-dimensional (3D), atomic-level structures of biomolecules, providing open access to the results of structural biology research with no limitations on usage. Roughly 40% of the structures in the archive exhibit some type of symmetry, including formal global symmetry, local symmetry, or pseudosymmetry. The Research Collaboratory for Structural Bioinformatics (RCSB) Protein Data Bank (founding member of the Worldwide Protein Data Bank partnership that jointly manages, curates, and disseminates the archive) provides a variety of tools to assist users interested in exploring the symmetry of biological macromolecules. These tools include multiple modalities for searching and browsing the archive, turnkey methods for biomolecular visualization, documentation, and outreach materials for exploring functional biomolecular symmetry. Portland Press Ltd. 2022-07-08 /pmc/articles/PMC9472815/ /pubmed/35801924 http://dx.doi.org/10.1042/ETLS20210267 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and the Royal Society of Biology and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Review Articles
Duarte, Jose M.
Dutta, Shuchismita
Goodsell, David S.
Burley, Stephen K.
Exploring protein symmetry at the RCSB Protein Data Bank
title Exploring protein symmetry at the RCSB Protein Data Bank
title_full Exploring protein symmetry at the RCSB Protein Data Bank
title_fullStr Exploring protein symmetry at the RCSB Protein Data Bank
title_full_unstemmed Exploring protein symmetry at the RCSB Protein Data Bank
title_short Exploring protein symmetry at the RCSB Protein Data Bank
title_sort exploring protein symmetry at the rcsb protein data bank
topic Review Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9472815/
https://www.ncbi.nlm.nih.gov/pubmed/35801924
http://dx.doi.org/10.1042/ETLS20210267
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