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Theoretical Investigation of Repurposed Drugs Potentially Capable of Binding to the Catalytic Site and the Secondary Binding Pocket of Subunit A of Ricin
[Image: see text] Recently, we reported a library of 82 compounds, selected from different databanks through virtual screening and docking studies, and pointed to 6 among them as potential repurposed dual binders to both the catalytic site and the secondary binding pockets of subunit A of ricin (RTA...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9476511/ https://www.ncbi.nlm.nih.gov/pubmed/36120038 http://dx.doi.org/10.1021/acsomega.2c04819 |
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author | França, Tanos C. C. Botelho, Fernanda D. Drummond, Michael L. LaPlante, Steven R. |
author_facet | França, Tanos C. C. Botelho, Fernanda D. Drummond, Michael L. LaPlante, Steven R. |
author_sort | França, Tanos C. C. |
collection | PubMed |
description | [Image: see text] Recently, we reported a library of 82 compounds, selected from different databanks through virtual screening and docking studies, and pointed to 6 among them as potential repurposed dual binders to both the catalytic site and the secondary binding pockets of subunit A of ricin (RTA). Here, we report additional molecular modeling studies of an extended list of compounds from the original library. Rounds of flexible docking followed by molecular dynamics simulations and further rounds of MM-PBSA calculations using a more robust protocol, enabled a better investigation of the interactions of these compounds inside RTA, the elucidation of their dynamical behaviors, and updating the list of the most important residues for the ligand binding. Four compounds were pointed as potential repurposed ricin inhibitors that are worth being experimentally investigated. |
format | Online Article Text |
id | pubmed-9476511 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-94765112022-09-16 Theoretical Investigation of Repurposed Drugs Potentially Capable of Binding to the Catalytic Site and the Secondary Binding Pocket of Subunit A of Ricin França, Tanos C. C. Botelho, Fernanda D. Drummond, Michael L. LaPlante, Steven R. ACS Omega [Image: see text] Recently, we reported a library of 82 compounds, selected from different databanks through virtual screening and docking studies, and pointed to 6 among them as potential repurposed dual binders to both the catalytic site and the secondary binding pockets of subunit A of ricin (RTA). Here, we report additional molecular modeling studies of an extended list of compounds from the original library. Rounds of flexible docking followed by molecular dynamics simulations and further rounds of MM-PBSA calculations using a more robust protocol, enabled a better investigation of the interactions of these compounds inside RTA, the elucidation of their dynamical behaviors, and updating the list of the most important residues for the ligand binding. Four compounds were pointed as potential repurposed ricin inhibitors that are worth being experimentally investigated. American Chemical Society 2022-08-26 /pmc/articles/PMC9476511/ /pubmed/36120038 http://dx.doi.org/10.1021/acsomega.2c04819 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | França, Tanos C. C. Botelho, Fernanda D. Drummond, Michael L. LaPlante, Steven R. Theoretical Investigation of Repurposed Drugs Potentially Capable of Binding to the Catalytic Site and the Secondary Binding Pocket of Subunit A of Ricin |
title | Theoretical Investigation
of Repurposed Drugs Potentially
Capable of Binding to the Catalytic Site and the Secondary Binding
Pocket of Subunit A of Ricin |
title_full | Theoretical Investigation
of Repurposed Drugs Potentially
Capable of Binding to the Catalytic Site and the Secondary Binding
Pocket of Subunit A of Ricin |
title_fullStr | Theoretical Investigation
of Repurposed Drugs Potentially
Capable of Binding to the Catalytic Site and the Secondary Binding
Pocket of Subunit A of Ricin |
title_full_unstemmed | Theoretical Investigation
of Repurposed Drugs Potentially
Capable of Binding to the Catalytic Site and the Secondary Binding
Pocket of Subunit A of Ricin |
title_short | Theoretical Investigation
of Repurposed Drugs Potentially
Capable of Binding to the Catalytic Site and the Secondary Binding
Pocket of Subunit A of Ricin |
title_sort | theoretical investigation
of repurposed drugs potentially
capable of binding to the catalytic site and the secondary binding
pocket of subunit a of ricin |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9476511/ https://www.ncbi.nlm.nih.gov/pubmed/36120038 http://dx.doi.org/10.1021/acsomega.2c04819 |
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