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Theoretical Investigation of Repurposed Drugs Potentially Capable of Binding to the Catalytic Site and the Secondary Binding Pocket of Subunit A of Ricin

[Image: see text] Recently, we reported a library of 82 compounds, selected from different databanks through virtual screening and docking studies, and pointed to 6 among them as potential repurposed dual binders to both the catalytic site and the secondary binding pockets of subunit A of ricin (RTA...

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Autores principales: França, Tanos C. C., Botelho, Fernanda D., Drummond, Michael L., LaPlante, Steven R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9476511/
https://www.ncbi.nlm.nih.gov/pubmed/36120038
http://dx.doi.org/10.1021/acsomega.2c04819
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author França, Tanos C. C.
Botelho, Fernanda D.
Drummond, Michael L.
LaPlante, Steven R.
author_facet França, Tanos C. C.
Botelho, Fernanda D.
Drummond, Michael L.
LaPlante, Steven R.
author_sort França, Tanos C. C.
collection PubMed
description [Image: see text] Recently, we reported a library of 82 compounds, selected from different databanks through virtual screening and docking studies, and pointed to 6 among them as potential repurposed dual binders to both the catalytic site and the secondary binding pockets of subunit A of ricin (RTA). Here, we report additional molecular modeling studies of an extended list of compounds from the original library. Rounds of flexible docking followed by molecular dynamics simulations and further rounds of MM-PBSA calculations using a more robust protocol, enabled a better investigation of the interactions of these compounds inside RTA, the elucidation of their dynamical behaviors, and updating the list of the most important residues for the ligand binding. Four compounds were pointed as potential repurposed ricin inhibitors that are worth being experimentally investigated.
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spelling pubmed-94765112022-09-16 Theoretical Investigation of Repurposed Drugs Potentially Capable of Binding to the Catalytic Site and the Secondary Binding Pocket of Subunit A of Ricin França, Tanos C. C. Botelho, Fernanda D. Drummond, Michael L. LaPlante, Steven R. ACS Omega [Image: see text] Recently, we reported a library of 82 compounds, selected from different databanks through virtual screening and docking studies, and pointed to 6 among them as potential repurposed dual binders to both the catalytic site and the secondary binding pockets of subunit A of ricin (RTA). Here, we report additional molecular modeling studies of an extended list of compounds from the original library. Rounds of flexible docking followed by molecular dynamics simulations and further rounds of MM-PBSA calculations using a more robust protocol, enabled a better investigation of the interactions of these compounds inside RTA, the elucidation of their dynamical behaviors, and updating the list of the most important residues for the ligand binding. Four compounds were pointed as potential repurposed ricin inhibitors that are worth being experimentally investigated. American Chemical Society 2022-08-26 /pmc/articles/PMC9476511/ /pubmed/36120038 http://dx.doi.org/10.1021/acsomega.2c04819 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle França, Tanos C. C.
Botelho, Fernanda D.
Drummond, Michael L.
LaPlante, Steven R.
Theoretical Investigation of Repurposed Drugs Potentially Capable of Binding to the Catalytic Site and the Secondary Binding Pocket of Subunit A of Ricin
title Theoretical Investigation of Repurposed Drugs Potentially Capable of Binding to the Catalytic Site and the Secondary Binding Pocket of Subunit A of Ricin
title_full Theoretical Investigation of Repurposed Drugs Potentially Capable of Binding to the Catalytic Site and the Secondary Binding Pocket of Subunit A of Ricin
title_fullStr Theoretical Investigation of Repurposed Drugs Potentially Capable of Binding to the Catalytic Site and the Secondary Binding Pocket of Subunit A of Ricin
title_full_unstemmed Theoretical Investigation of Repurposed Drugs Potentially Capable of Binding to the Catalytic Site and the Secondary Binding Pocket of Subunit A of Ricin
title_short Theoretical Investigation of Repurposed Drugs Potentially Capable of Binding to the Catalytic Site and the Secondary Binding Pocket of Subunit A of Ricin
title_sort theoretical investigation of repurposed drugs potentially capable of binding to the catalytic site and the secondary binding pocket of subunit a of ricin
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9476511/
https://www.ncbi.nlm.nih.gov/pubmed/36120038
http://dx.doi.org/10.1021/acsomega.2c04819
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