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A community-developed extension to Darwin Core for reporting the chronometric age of specimens

Darwin Core, the data standard used for sharing modern biodiversity and paleodiversity occurrence records, has previously lacked proper mechanisms for reporting what is known about the estimated age range of specimens from deep time. This has led to data providers putting these data in fields where...

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Autores principales: Brenskelle, Laura, Wieczorek, John, Davis, Edward, Wallis, Neill J., Emery, Kitty, LeFebvre, Michelle J., Guralnick, Rob
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9477364/
https://www.ncbi.nlm.nih.gov/pubmed/36107867
http://dx.doi.org/10.1371/journal.pone.0261044
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author Brenskelle, Laura
Wieczorek, John
Davis, Edward
Wallis, Neill J.
Emery, Kitty
LeFebvre, Michelle J.
Guralnick, Rob
author_facet Brenskelle, Laura
Wieczorek, John
Davis, Edward
Wallis, Neill J.
Emery, Kitty
LeFebvre, Michelle J.
Guralnick, Rob
author_sort Brenskelle, Laura
collection PubMed
description Darwin Core, the data standard used for sharing modern biodiversity and paleodiversity occurrence records, has previously lacked proper mechanisms for reporting what is known about the estimated age range of specimens from deep time. This has led to data providers putting these data in fields where they cannot easily be found by users, which impedes the reuse and improvement of these data by other researchers. Here we describe the development of the Chronometric Age Extension to Darwin Core, a ratified, community-developed extension that enables the reporting of ages of specimens from deeper time and the evidence supporting these estimates. The extension standardizes reporting about the methods or assays used to determine an age and other critical information like uncertainty. It gives data providers flexibility about the level of detail reported, focusing on the minimum information needed for reuse while still allowing for significant detail if providers have it. Providing a standardized format for reporting these data will make them easier to find and search and enable researchers to pinpoint specimens of interest for data improvement or accumulate more data for broad temporal studies. The Chronometric Age Extension was also the first community-managed vocabulary to undergo the new Biodiversity Informatics Standards (TDWG) review and ratification process, thus providing a blueprint for future Darwin Core extension development.
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spelling pubmed-94773642022-09-16 A community-developed extension to Darwin Core for reporting the chronometric age of specimens Brenskelle, Laura Wieczorek, John Davis, Edward Wallis, Neill J. Emery, Kitty LeFebvre, Michelle J. Guralnick, Rob PLoS One Research Article Darwin Core, the data standard used for sharing modern biodiversity and paleodiversity occurrence records, has previously lacked proper mechanisms for reporting what is known about the estimated age range of specimens from deep time. This has led to data providers putting these data in fields where they cannot easily be found by users, which impedes the reuse and improvement of these data by other researchers. Here we describe the development of the Chronometric Age Extension to Darwin Core, a ratified, community-developed extension that enables the reporting of ages of specimens from deeper time and the evidence supporting these estimates. The extension standardizes reporting about the methods or assays used to determine an age and other critical information like uncertainty. It gives data providers flexibility about the level of detail reported, focusing on the minimum information needed for reuse while still allowing for significant detail if providers have it. Providing a standardized format for reporting these data will make them easier to find and search and enable researchers to pinpoint specimens of interest for data improvement or accumulate more data for broad temporal studies. The Chronometric Age Extension was also the first community-managed vocabulary to undergo the new Biodiversity Informatics Standards (TDWG) review and ratification process, thus providing a blueprint for future Darwin Core extension development. Public Library of Science 2022-09-15 /pmc/articles/PMC9477364/ /pubmed/36107867 http://dx.doi.org/10.1371/journal.pone.0261044 Text en © 2022 Brenskelle et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Brenskelle, Laura
Wieczorek, John
Davis, Edward
Wallis, Neill J.
Emery, Kitty
LeFebvre, Michelle J.
Guralnick, Rob
A community-developed extension to Darwin Core for reporting the chronometric age of specimens
title A community-developed extension to Darwin Core for reporting the chronometric age of specimens
title_full A community-developed extension to Darwin Core for reporting the chronometric age of specimens
title_fullStr A community-developed extension to Darwin Core for reporting the chronometric age of specimens
title_full_unstemmed A community-developed extension to Darwin Core for reporting the chronometric age of specimens
title_short A community-developed extension to Darwin Core for reporting the chronometric age of specimens
title_sort community-developed extension to darwin core for reporting the chronometric age of specimens
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9477364/
https://www.ncbi.nlm.nih.gov/pubmed/36107867
http://dx.doi.org/10.1371/journal.pone.0261044
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