Cargando…
A community-developed extension to Darwin Core for reporting the chronometric age of specimens
Darwin Core, the data standard used for sharing modern biodiversity and paleodiversity occurrence records, has previously lacked proper mechanisms for reporting what is known about the estimated age range of specimens from deep time. This has led to data providers putting these data in fields where...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9477364/ https://www.ncbi.nlm.nih.gov/pubmed/36107867 http://dx.doi.org/10.1371/journal.pone.0261044 |
_version_ | 1784790345497706496 |
---|---|
author | Brenskelle, Laura Wieczorek, John Davis, Edward Wallis, Neill J. Emery, Kitty LeFebvre, Michelle J. Guralnick, Rob |
author_facet | Brenskelle, Laura Wieczorek, John Davis, Edward Wallis, Neill J. Emery, Kitty LeFebvre, Michelle J. Guralnick, Rob |
author_sort | Brenskelle, Laura |
collection | PubMed |
description | Darwin Core, the data standard used for sharing modern biodiversity and paleodiversity occurrence records, has previously lacked proper mechanisms for reporting what is known about the estimated age range of specimens from deep time. This has led to data providers putting these data in fields where they cannot easily be found by users, which impedes the reuse and improvement of these data by other researchers. Here we describe the development of the Chronometric Age Extension to Darwin Core, a ratified, community-developed extension that enables the reporting of ages of specimens from deeper time and the evidence supporting these estimates. The extension standardizes reporting about the methods or assays used to determine an age and other critical information like uncertainty. It gives data providers flexibility about the level of detail reported, focusing on the minimum information needed for reuse while still allowing for significant detail if providers have it. Providing a standardized format for reporting these data will make them easier to find and search and enable researchers to pinpoint specimens of interest for data improvement or accumulate more data for broad temporal studies. The Chronometric Age Extension was also the first community-managed vocabulary to undergo the new Biodiversity Informatics Standards (TDWG) review and ratification process, thus providing a blueprint for future Darwin Core extension development. |
format | Online Article Text |
id | pubmed-9477364 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-94773642022-09-16 A community-developed extension to Darwin Core for reporting the chronometric age of specimens Brenskelle, Laura Wieczorek, John Davis, Edward Wallis, Neill J. Emery, Kitty LeFebvre, Michelle J. Guralnick, Rob PLoS One Research Article Darwin Core, the data standard used for sharing modern biodiversity and paleodiversity occurrence records, has previously lacked proper mechanisms for reporting what is known about the estimated age range of specimens from deep time. This has led to data providers putting these data in fields where they cannot easily be found by users, which impedes the reuse and improvement of these data by other researchers. Here we describe the development of the Chronometric Age Extension to Darwin Core, a ratified, community-developed extension that enables the reporting of ages of specimens from deeper time and the evidence supporting these estimates. The extension standardizes reporting about the methods or assays used to determine an age and other critical information like uncertainty. It gives data providers flexibility about the level of detail reported, focusing on the minimum information needed for reuse while still allowing for significant detail if providers have it. Providing a standardized format for reporting these data will make them easier to find and search and enable researchers to pinpoint specimens of interest for data improvement or accumulate more data for broad temporal studies. The Chronometric Age Extension was also the first community-managed vocabulary to undergo the new Biodiversity Informatics Standards (TDWG) review and ratification process, thus providing a blueprint for future Darwin Core extension development. Public Library of Science 2022-09-15 /pmc/articles/PMC9477364/ /pubmed/36107867 http://dx.doi.org/10.1371/journal.pone.0261044 Text en © 2022 Brenskelle et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Brenskelle, Laura Wieczorek, John Davis, Edward Wallis, Neill J. Emery, Kitty LeFebvre, Michelle J. Guralnick, Rob A community-developed extension to Darwin Core for reporting the chronometric age of specimens |
title | A community-developed extension to Darwin Core for reporting the chronometric age of specimens |
title_full | A community-developed extension to Darwin Core for reporting the chronometric age of specimens |
title_fullStr | A community-developed extension to Darwin Core for reporting the chronometric age of specimens |
title_full_unstemmed | A community-developed extension to Darwin Core for reporting the chronometric age of specimens |
title_short | A community-developed extension to Darwin Core for reporting the chronometric age of specimens |
title_sort | community-developed extension to darwin core for reporting the chronometric age of specimens |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9477364/ https://www.ncbi.nlm.nih.gov/pubmed/36107867 http://dx.doi.org/10.1371/journal.pone.0261044 |
work_keys_str_mv | AT brenskellelaura acommunitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT wieczorekjohn acommunitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT davisedward acommunitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT wallisneillj acommunitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT emerykitty acommunitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT lefebvremichellej acommunitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT guralnickrob acommunitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT brenskellelaura communitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT wieczorekjohn communitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT davisedward communitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT wallisneillj communitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT emerykitty communitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT lefebvremichellej communitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens AT guralnickrob communitydevelopedextensiontodarwincoreforreportingthechronometricageofspecimens |