The K-mer File Format: a standardized and compact disk representation of sets of k-mers

SUMMARY: Bioinformatics applications increasingly rely on ad hoc disk storage of k-mer sets, e.g. for de Bruijn graphs or alignment indexes. Here, we introduce the K-mer File Format as a general lossless framework for storing and manipulating k-mer sets, realizing space savings of 3–5× compared to o...

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Detalles Bibliográficos
Autores principales: Dufresne, Yoann, Lemane, Teo, Marijon, Pierre, Peterlongo, Pierre, Rahman, Amatur, Kokot, Marek, Medvedev, Paul, Deorowicz, Sebastian, Chikhi, Rayan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9477520/
https://www.ncbi.nlm.nih.gov/pubmed/35904548
http://dx.doi.org/10.1093/bioinformatics/btac528

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