Cargando…
TEspeX: consensus-specific quantification of transposable element expression preventing biases from exonized fragments
SUMMARY: Transposable elements (TEs) play key roles in crucial biological pathways. Therefore, several tools enabling the quantification of their expression were recently developed. However, many of the existing tools lack the capability to distinguish between the transcription of autonomously expre...
Autores principales: | Ansaloni, Federico, Gualandi, Nicolò, Esposito, Mauro, Gustincich, Stefano, Sanges, Remo |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9477521/ https://www.ncbi.nlm.nih.gov/pubmed/35876845 http://dx.doi.org/10.1093/bioinformatics/btac526 |
Ejemplares similares
-
Meta-Analysis Suggests That Intron Retention Can Affect Quantification of Transposable Elements from RNA-Seq Data
por: Gualandi, Nicolò, et al.
Publicado: (2022) -
Transposons Acting as Competitive Endogenous RNAs: In-Silico Evidence from Datasets Characterised by L1 Overexpression
por: Esposito, Mauro, et al.
Publicado: (2022) -
Exploratory analysis of transposable elements expression in the C. elegans early embryo
por: Ansaloni, Federico, et al.
Publicado: (2019) -
Impact of polymorphic transposable elements on transcription in lymphoblastoid cell lines from public data
por: Spirito, Giovanni, et al.
Publicado: (2019) -
In silico characterisation of minor wave genes and LINE-1s transcriptional dynamics at murine zygotic genome activation
por: Ansaloni, Federico, et al.
Publicado: (2023)