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Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation

Natural-abundance measurements of nitrate and nitrite (NO(x)) isotope ratios (δ(15)N and δ(18)O) can be a valuable tool to study the biogeochemical fate of NO(x) species in the environment. A prerequisite for using NO(x) isotopes in this regard is an understanding of the mechanistic details of isoto...

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Autores principales: Visser, Anna-Neva, Wankel, Scott D., Frey, Claudia, Kappler, Andreas, Lehmann, Moritz F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9478938/
https://www.ncbi.nlm.nih.gov/pubmed/36118224
http://dx.doi.org/10.3389/fmicb.2022.927475
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author Visser, Anna-Neva
Wankel, Scott D.
Frey, Claudia
Kappler, Andreas
Lehmann, Moritz F.
author_facet Visser, Anna-Neva
Wankel, Scott D.
Frey, Claudia
Kappler, Andreas
Lehmann, Moritz F.
author_sort Visser, Anna-Neva
collection PubMed
description Natural-abundance measurements of nitrate and nitrite (NO(x)) isotope ratios (δ(15)N and δ(18)O) can be a valuable tool to study the biogeochemical fate of NO(x) species in the environment. A prerequisite for using NO(x) isotopes in this regard is an understanding of the mechanistic details of isotope fractionation ((15)ε, (18)ε) associated with the biotic and abiotic NO(x) transformation processes involved (e.g., denitrification). However, possible impacts on isotope fractionation resulting from changing growth conditions during denitrification, different carbon substrates, or simply the presence of compounds that may be involved in NO(x) reduction as co-substrates [e.g., Fe(II)] remain uncertain. Here we investigated whether the type of organic substrate, i.e., short-chained organic acids, and the presence/absence of Fe(II) (mixotrophic vs. heterotrophic growth conditions) affect N and O isotope fractionation dynamics during nitrate (NO(3)(–)) and nitrite (NO(2)(–)) reduction in laboratory experiments with three strains of putative nitrate-dependent Fe(II)-oxidizing bacteria and one canonical denitrifier. Our results revealed that (15)ε and (18)ε values obtained for heterotrophic ((15)ε-NO(3)(–): 17.6 ± 2.8‰, (18)ε-NO(3)(–):18.1 ± 2.5‰; (15)ε-NO(2)(–): 14.4 ± 3.2‰) vs. mixotrophic ((15)ε-NO(3)(–): 20.2 ± 1.4‰, (18)ε-NO(3)(–): 19.5 ± 1.5‰; (15)ε-NO(2)(–): 16.1 ± 1.4‰) growth conditions are very similar and fall within the range previously reported for classical heterotrophic denitrification. Moreover, availability of different short-chain organic acids (succinate vs. acetate), while slightly affecting the NO(x) reduction dynamics, did not produce distinct differences in N and O isotope effects. N isotope fractionation in abiotic controls, although exhibiting fluctuating results, even expressed transient inverse isotope dynamics ((15)ε-NO(2)(–): –12.4 ± 1.3 ‰). These findings imply that neither the mechanisms ordaining cellular uptake of short-chain organic acids nor the presence of Fe(II) seem to systematically impact the overall N and O isotope effect during NO(x) reduction. The similar isotope effects detected during mixotrophic and heterotrophic NO(x) reduction, as well as the results obtained from the abiotic controls, may not only imply that the enzymatic control of NO(x) reduction in putative NDFeOx bacteria is decoupled from Fe(II) oxidation, but also that Fe(II) oxidation is indirectly driven by biologically (i.e., via organic compounds) or abiotically (catalysis via reactive surfaces) mediated processes co-occurring during heterotrophic denitrification.
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spelling pubmed-94789382022-09-17 Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation Visser, Anna-Neva Wankel, Scott D. Frey, Claudia Kappler, Andreas Lehmann, Moritz F. Front Microbiol Microbiology Natural-abundance measurements of nitrate and nitrite (NO(x)) isotope ratios (δ(15)N and δ(18)O) can be a valuable tool to study the biogeochemical fate of NO(x) species in the environment. A prerequisite for using NO(x) isotopes in this regard is an understanding of the mechanistic details of isotope fractionation ((15)ε, (18)ε) associated with the biotic and abiotic NO(x) transformation processes involved (e.g., denitrification). However, possible impacts on isotope fractionation resulting from changing growth conditions during denitrification, different carbon substrates, or simply the presence of compounds that may be involved in NO(x) reduction as co-substrates [e.g., Fe(II)] remain uncertain. Here we investigated whether the type of organic substrate, i.e., short-chained organic acids, and the presence/absence of Fe(II) (mixotrophic vs. heterotrophic growth conditions) affect N and O isotope fractionation dynamics during nitrate (NO(3)(–)) and nitrite (NO(2)(–)) reduction in laboratory experiments with three strains of putative nitrate-dependent Fe(II)-oxidizing bacteria and one canonical denitrifier. Our results revealed that (15)ε and (18)ε values obtained for heterotrophic ((15)ε-NO(3)(–): 17.6 ± 2.8‰, (18)ε-NO(3)(–):18.1 ± 2.5‰; (15)ε-NO(2)(–): 14.4 ± 3.2‰) vs. mixotrophic ((15)ε-NO(3)(–): 20.2 ± 1.4‰, (18)ε-NO(3)(–): 19.5 ± 1.5‰; (15)ε-NO(2)(–): 16.1 ± 1.4‰) growth conditions are very similar and fall within the range previously reported for classical heterotrophic denitrification. Moreover, availability of different short-chain organic acids (succinate vs. acetate), while slightly affecting the NO(x) reduction dynamics, did not produce distinct differences in N and O isotope effects. N isotope fractionation in abiotic controls, although exhibiting fluctuating results, even expressed transient inverse isotope dynamics ((15)ε-NO(2)(–): –12.4 ± 1.3 ‰). These findings imply that neither the mechanisms ordaining cellular uptake of short-chain organic acids nor the presence of Fe(II) seem to systematically impact the overall N and O isotope effect during NO(x) reduction. The similar isotope effects detected during mixotrophic and heterotrophic NO(x) reduction, as well as the results obtained from the abiotic controls, may not only imply that the enzymatic control of NO(x) reduction in putative NDFeOx bacteria is decoupled from Fe(II) oxidation, but also that Fe(II) oxidation is indirectly driven by biologically (i.e., via organic compounds) or abiotically (catalysis via reactive surfaces) mediated processes co-occurring during heterotrophic denitrification. Frontiers Media S.A. 2022-09-02 /pmc/articles/PMC9478938/ /pubmed/36118224 http://dx.doi.org/10.3389/fmicb.2022.927475 Text en Copyright © 2022 Visser, Wankel, Frey, Kappler and Lehmann. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Visser, Anna-Neva
Wankel, Scott D.
Frey, Claudia
Kappler, Andreas
Lehmann, Moritz F.
Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation
title Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation
title_full Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation
title_fullStr Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation
title_full_unstemmed Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation
title_short Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation
title_sort unchanged nitrate and nitrite isotope fractionation during heterotrophic and fe(ii)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and fe(ii) oxidation
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9478938/
https://www.ncbi.nlm.nih.gov/pubmed/36118224
http://dx.doi.org/10.3389/fmicb.2022.927475
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