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An autophagy-associated lncRNAs model for predicting the survival in non-small cell lung cancer patients

Long non-coding RNAs (lncRNAs) can influence the proliferation, autophagy, and apoptosis of non-small cell lung cancer (NSCLC). LncRNAs also emerge as valuable prognostic factors for NSCLC patients. Consequently, we set out to discover more autophagy-associated lncRNAs. We acquired autophagy-associa...

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Autores principales: Hu, Jing, Zhang, Pei-Jin, Zhang, Di, Chen, Zhao-Hui, Cao, Xu-Chen, Yu, Yue, Ge, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9479339/
https://www.ncbi.nlm.nih.gov/pubmed/36118862
http://dx.doi.org/10.3389/fgene.2022.919857
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author Hu, Jing
Zhang, Pei-Jin
Zhang, Di
Chen, Zhao-Hui
Cao, Xu-Chen
Yu, Yue
Ge, Jie
author_facet Hu, Jing
Zhang, Pei-Jin
Zhang, Di
Chen, Zhao-Hui
Cao, Xu-Chen
Yu, Yue
Ge, Jie
author_sort Hu, Jing
collection PubMed
description Long non-coding RNAs (lncRNAs) can influence the proliferation, autophagy, and apoptosis of non-small cell lung cancer (NSCLC). LncRNAs also emerge as valuable prognostic factors for NSCLC patients. Consequently, we set out to discover more autophagy-associated lncRNAs. We acquired autophagy-associated genes and information on lncRNAs from The Cancer Genome Atlas database (TCGA), and the Human Autophagy Database (HADb). Then, the prognostic prediction signature was constructed through using co-expression and Cox regression analysis. The signature was constructed including 7 autophagy-associated lncRNAs (ABALON, NKILA, LINC00941, AL161431.1, AL691432.2, AC020765.2, MMP2-AS1). After that, we used univariate and multivariate Cox regression analysis to calculate the risk score. The survival analysis and ROC curve analysis confirmed good performances of the signature. GSEA indicated that the high-risk group was principally enriched in the adherens junction pathway. In addition, biological experiments showed that ABALON promoted the proliferation, metastasis and autophagy levels of NSCLC cells. These findings demonstrate that the risk signature consisting of 7 autophagy-associated lncRNAs accurately predicts the prognosis of NSCLC patients and should be investigated for potential therapeutic targets in clinic.
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spelling pubmed-94793392022-09-17 An autophagy-associated lncRNAs model for predicting the survival in non-small cell lung cancer patients Hu, Jing Zhang, Pei-Jin Zhang, Di Chen, Zhao-Hui Cao, Xu-Chen Yu, Yue Ge, Jie Front Genet Genetics Long non-coding RNAs (lncRNAs) can influence the proliferation, autophagy, and apoptosis of non-small cell lung cancer (NSCLC). LncRNAs also emerge as valuable prognostic factors for NSCLC patients. Consequently, we set out to discover more autophagy-associated lncRNAs. We acquired autophagy-associated genes and information on lncRNAs from The Cancer Genome Atlas database (TCGA), and the Human Autophagy Database (HADb). Then, the prognostic prediction signature was constructed through using co-expression and Cox regression analysis. The signature was constructed including 7 autophagy-associated lncRNAs (ABALON, NKILA, LINC00941, AL161431.1, AL691432.2, AC020765.2, MMP2-AS1). After that, we used univariate and multivariate Cox regression analysis to calculate the risk score. The survival analysis and ROC curve analysis confirmed good performances of the signature. GSEA indicated that the high-risk group was principally enriched in the adherens junction pathway. In addition, biological experiments showed that ABALON promoted the proliferation, metastasis and autophagy levels of NSCLC cells. These findings demonstrate that the risk signature consisting of 7 autophagy-associated lncRNAs accurately predicts the prognosis of NSCLC patients and should be investigated for potential therapeutic targets in clinic. Frontiers Media S.A. 2022-09-02 /pmc/articles/PMC9479339/ /pubmed/36118862 http://dx.doi.org/10.3389/fgene.2022.919857 Text en Copyright © 2022 Hu, Zhang, Zhang, Chen, Cao, Yu and Ge. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Hu, Jing
Zhang, Pei-Jin
Zhang, Di
Chen, Zhao-Hui
Cao, Xu-Chen
Yu, Yue
Ge, Jie
An autophagy-associated lncRNAs model for predicting the survival in non-small cell lung cancer patients
title An autophagy-associated lncRNAs model for predicting the survival in non-small cell lung cancer patients
title_full An autophagy-associated lncRNAs model for predicting the survival in non-small cell lung cancer patients
title_fullStr An autophagy-associated lncRNAs model for predicting the survival in non-small cell lung cancer patients
title_full_unstemmed An autophagy-associated lncRNAs model for predicting the survival in non-small cell lung cancer patients
title_short An autophagy-associated lncRNAs model for predicting the survival in non-small cell lung cancer patients
title_sort autophagy-associated lncrnas model for predicting the survival in non-small cell lung cancer patients
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9479339/
https://www.ncbi.nlm.nih.gov/pubmed/36118862
http://dx.doi.org/10.3389/fgene.2022.919857
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