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Ecological niche modeling based on ensemble algorithms to predicting current and future potential distribution of African swine fever virus in China

African swine fever (ASF) is a tick-borne infectious disease initially described in Shenyang province China in 2018 but is now currently present nationwide. ASF has high infectivity and mortality rates, which often results in transportation and trade bans, and high expenses to prevent and control th...

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Autores principales: Li, Yue-peng, Gao, Xiang, An, Qi, Sun, Zhuo, Wang, Hong-bin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9481527/
https://www.ncbi.nlm.nih.gov/pubmed/36114368
http://dx.doi.org/10.1038/s41598-022-20008-x
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author Li, Yue-peng
Gao, Xiang
An, Qi
Sun, Zhuo
Wang, Hong-bin
author_facet Li, Yue-peng
Gao, Xiang
An, Qi
Sun, Zhuo
Wang, Hong-bin
author_sort Li, Yue-peng
collection PubMed
description African swine fever (ASF) is a tick-borne infectious disease initially described in Shenyang province China in 2018 but is now currently present nationwide. ASF has high infectivity and mortality rates, which often results in transportation and trade bans, and high expenses to prevent and control the, hence causing huge economic losses and a huge negative impact on the Chinese pig farming industry. Ecological niche modeling has long been adopted in the epidemiology of infectious diseases, in particular vector-borne diseases. This study aimed to establish an ecological niche model combined with data from ASF incidence rates in China from August 2018 to December 2021 in order to predict areas for African swine fever virus (ASFV) distribution in China. The model was developed in R software using the biomod2 package and ensemble modeling techniques. Environmental and topographic variables included were mean diurnal range (°C), isothermality, mean temperature of wettest quarter (°C), precipitation seasonality (cv), mean precipitation of warmest quarter(mm), mean precipitation of coldest quarter (mm), normalized difference vegetation index, wind speed (m/s), solar radiation (kJ /day), and elevation/altitude (m). Contribution rates of the variables normalized difference vegetation index, mean temperature of wettest quarter, mean precipitation of coldest quarter, and mean precipitation of warmest quarter were, respectively, 47.61%, 28.85%, 10.85%, and 7.27% (according to CA), which accounted for over 80% of contribution rates related to variables. According to model prediction, most of areas revealed as suitable for ASF distribution are located in the southeast coast or central region of China, wherein environmental conditions are suitable for soft ticks’ survival. In contrast, areas unsuitable for ASFV distribution in China are associated with arid climate and poor vegetation, which are less conducive to soft ticks’ survival, hence to ASFV transmission. In addition, prediction spatial suitability for future ASFV distribution suggests narrower areas for ASFV spread. Thus, the ensemble model designed herein could be used to conceive more efficient prevention and control measure against ASF according to different geographical locations in China.
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spelling pubmed-94815272022-09-18 Ecological niche modeling based on ensemble algorithms to predicting current and future potential distribution of African swine fever virus in China Li, Yue-peng Gao, Xiang An, Qi Sun, Zhuo Wang, Hong-bin Sci Rep Article African swine fever (ASF) is a tick-borne infectious disease initially described in Shenyang province China in 2018 but is now currently present nationwide. ASF has high infectivity and mortality rates, which often results in transportation and trade bans, and high expenses to prevent and control the, hence causing huge economic losses and a huge negative impact on the Chinese pig farming industry. Ecological niche modeling has long been adopted in the epidemiology of infectious diseases, in particular vector-borne diseases. This study aimed to establish an ecological niche model combined with data from ASF incidence rates in China from August 2018 to December 2021 in order to predict areas for African swine fever virus (ASFV) distribution in China. The model was developed in R software using the biomod2 package and ensemble modeling techniques. Environmental and topographic variables included were mean diurnal range (°C), isothermality, mean temperature of wettest quarter (°C), precipitation seasonality (cv), mean precipitation of warmest quarter(mm), mean precipitation of coldest quarter (mm), normalized difference vegetation index, wind speed (m/s), solar radiation (kJ /day), and elevation/altitude (m). Contribution rates of the variables normalized difference vegetation index, mean temperature of wettest quarter, mean precipitation of coldest quarter, and mean precipitation of warmest quarter were, respectively, 47.61%, 28.85%, 10.85%, and 7.27% (according to CA), which accounted for over 80% of contribution rates related to variables. According to model prediction, most of areas revealed as suitable for ASF distribution are located in the southeast coast or central region of China, wherein environmental conditions are suitable for soft ticks’ survival. In contrast, areas unsuitable for ASFV distribution in China are associated with arid climate and poor vegetation, which are less conducive to soft ticks’ survival, hence to ASFV transmission. In addition, prediction spatial suitability for future ASFV distribution suggests narrower areas for ASFV spread. Thus, the ensemble model designed herein could be used to conceive more efficient prevention and control measure against ASF according to different geographical locations in China. Nature Publishing Group UK 2022-09-16 /pmc/articles/PMC9481527/ /pubmed/36114368 http://dx.doi.org/10.1038/s41598-022-20008-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Li, Yue-peng
Gao, Xiang
An, Qi
Sun, Zhuo
Wang, Hong-bin
Ecological niche modeling based on ensemble algorithms to predicting current and future potential distribution of African swine fever virus in China
title Ecological niche modeling based on ensemble algorithms to predicting current and future potential distribution of African swine fever virus in China
title_full Ecological niche modeling based on ensemble algorithms to predicting current and future potential distribution of African swine fever virus in China
title_fullStr Ecological niche modeling based on ensemble algorithms to predicting current and future potential distribution of African swine fever virus in China
title_full_unstemmed Ecological niche modeling based on ensemble algorithms to predicting current and future potential distribution of African swine fever virus in China
title_short Ecological niche modeling based on ensemble algorithms to predicting current and future potential distribution of African swine fever virus in China
title_sort ecological niche modeling based on ensemble algorithms to predicting current and future potential distribution of african swine fever virus in china
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9481527/
https://www.ncbi.nlm.nih.gov/pubmed/36114368
http://dx.doi.org/10.1038/s41598-022-20008-x
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